PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PNH06247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena
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Family | C3H | ||||||||
Protein Properties | Length: 198aa MW: 22402.2 Da PI: 7.6223 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.5 | 4.4e-13 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y C+++ +tG+C+yGd CkF+H+ PNH06247.1 47 YQPDVCKDYKETGYCSYGDACKFMHD 72 66789********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MYKGTNAYID YRKGFRREHT VAAEKGTGSH GPLRGSAYMR VTARFDYQPD VCKDYKETGY 60 CSYGDACKFM HDRGDYKSGW ELDKMWEEEQ KKKADALARG WNPDEEEGEG AGGAVPEEED 120 ELPFACFICR ERWEDCKTPP VVTRCKHYFC EKCALKASSK ANKCAVCGQS TQGIFNVAHD 180 VLKRQRLAAA AEAAKHKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-74 | C3H family protein |