PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH05080.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

NF-YC

Protein Properties

Length: 583aa MW: 56289.7 Da PI: 9.32

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH05080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.4	1.8e-14	8	84	22	97
NF-YC 22 Pl.arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 Pl +rikk++++d+dv +is +P+l+ +a elf+ +l ++ a++ + +tl s ++aav ++ dfl + v PNH05080.1 8 PLaTRIKKMMQKDDDVGKISQATPILIGRAMELFLEKLCTQAISIAQNRHAKTLTASHLKAAVGADKTMDFLAELVA 84 6636********************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MKTRKICPLA TRIKKMMQKD DDVGKISQAT PILIGRAMEL FLEKLCTQAI SIAQNRHAKT 60 LTASHLKAAV GADKTMDFLA ELVAAAPDLP AADAEGADAP PKAVKRRRTN DMGDGPASPQ 120 GRGAKASAAA AAAAAAAAAA GEDATPAPVP ARGKGSKPPL PRSAPASHGP PVRAPSGNLA 180 GPSSFADGSS EQQQANEPTT TGRRSATPQR QQQRQSKAAA SKAATAPAEL EPPAPAPSAP 240 SSAPPSCSAA APAASAAAAS AAPPEPVAAV VQPPAARREP AAPKPEPAAA ASNAQGGGGG 300 GGAGGSIVAS LRAQQPFFGL GRRGKSMGAK GAGGGGAPHA PSQHHQQTGS AAAAVGGAGP 360 ASANPADGPW LQALHQGPHS FSLKLEPLDL SGPAPPLNGW LPPGAHAFAH QGSDGGRAAA 420 AAVQRGDDAG AAHSSGPRGP SGGGADGGGG GFTAGPLSSS PSPFEVRRGL AAGLGGAARR 480 SGGGGGPPLR PVEGAGAALP GWGEMGNGEQ QLSVVGSCAL PGMAMMGAVA GAAGVGTGVT 540 GVDDAGFGAG PGGQVLSSLG ASLALFGAPQ QQQQDDMDDD YDC

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MKTRKICPLA TRIKKMMQKD DDVGKISQAT PILIGRAMEL FLEKLCTQAI SIAQNRHAKT  60
LTASHLKAAV GADKTMDFLA ELVAAAPDLP AADAEGADAP PKAVKRRRTN DMGDGPASPQ  120
GRGAKASAAA AAAAAAAAAA GEDATPAPVP ARGKGSKPPL PRSAPASHGP PVRAPSGNLA  180
GPSSFADGSS EQQQANEPTT TGRRSATPQR QQQRQSKAAA SKAATAPAEL EPPAPAPSAP  240
SSAPPSCSAA APAASAAAAS AAPPEPVAAV VQPPAARREP AAPKPEPAAA ASNAQGGGGG  300
GGAGGSIVAS LRAQQPFFGL GRRGKSMGAK GAGGGGAPHA PSQHHQQTGS AAAAVGGAGP  360
ASANPADGPW LQALHQGPHS FSLKLEPLDL SGPAPPLNGW LPPGAHAFAH QGSDGGRAAA  420
AAVQRGDDAG AAHSSGPRGP SGGGADGGGG GFTAGPLSSS PSPFEVRRGL AAGLGGAARR  480
SGGGGGPPLR PVEGAGAALP GWGEMGNGEQ QLSVVGSCAL PGMAMMGAVA GAAGVGTGVT  540
GVDDAGFGAG PGGQVLSSLG ASLALFGAPQ QQQQDDMDDD YDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	107	PKAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-17	NF-YC family protein