PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G19490.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-YC
Protein Properties Length: 264aa    MW: 29560.5 Da    PI: 4.8478
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G19490.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.14.8e-196861898
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                 ++++P +rikki+++de+v +i+  +P l+ska elf+ +l   ++  + +   +t++   ++++v+ t++fdfl d+v +
  AT5G19490.1  6 QTRFPATRIKKIMQTDEEVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTVNAFHLKQCVQATNVFDFLRDTVAK 86
                 789***************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-25272IPR009072Histone-fold
PfamPF008081.7E-17871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471134.92E-191887IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000005anatomycultured plant cell
PO:0000293anatomyguard cell
PO:0009009anatomyplant embryo
PO:0009030anatomycarpel
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MKKKLQTRFP ATRIKKIMQT DEEVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK  60
TVNAFHLKQC VQATNVFDFL RDTVAKVPDL GGSDTEDQSA TKRRKVVDGS SCNDEDMIKT  120
TQMHEVKHTS CGRGRRGRGR GRSSGRTGSG LSLKFEEDLE DGSPESSRTP SPENGSLSHD  180
DTSWKKVASH NNHHSSNSEV KVRNFDLNVE LDENGDNATW LETQLERSPD YPLEINEMKI  240
DPDDQQQASA SDEEDYDEES IDQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1865242580.0
Genevisible245942_at0.0
Expression AtlasAT5G19490-
AtGenExpressAT5G19490-
ATTED-IIAT5G19490-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G19490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G19490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankT20D10.0AF296830.1 Arabidopsis thaliana BAC T20D1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_197450.20.0Histone superfamily protein
TrEMBLF4K1620.0F4K162_ARATH; Histone superfamily protein
STRINGAT5G19490.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139682124
Representative plantOGRP21791635