PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH04928.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

MYB_related

Protein Properties

Length: 829aa MW: 84909.6 Da PI: 6.9796

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH04928.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.9e-08	106	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W+ E+ l++ + +lG++ W+ I+ ++ R+++++k+ w++ PNH04928.1 106 RGEWSCAEEMVLARKHMELGNK-WTNISTFLP-ARSDNDVKNIWHST 150 899*****************.*****.*******99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 829 aa Download sequence
MDEGSPGSPG GQAAKGVDTH GRLARSRSLS KGTAALSVLK SSTKLHQRRG SASHARFVEE 60 EEGSQDDEEG SQDDGSRRRN GGASGPAVSK AVKQLATDGG RRNAARGEWS CAEEMVLARK 120 HMELGNKWTN ISTFLPARSD NDVKNIWHST LRSKNTDRRS FLRTYARAVR DCANDGDARR 180 QAYDMAQRMC GSPQAIELAL AQVQQQYQQH LVAGQQPDDA PEPSQSPEHD QQQQQGELER 240 ELSRGGLGAP LGLQYDPREQ SPLLQMLQQQ QRLEEPQLEA RRSGTCSRSN SVAGEQSALL 300 HAGTGAKGRL SPCPSPRPKR QQRTPAPSAS PLDALDAAAA AGGGLAALGG LHPSLILAQR 360 DATHFRSYSY SHAHLAPGED SLRSLPSAGR HSDLLDSSCL ARLSALQLAD QRQRQHLQQQ 420 LGAGGAAGAG GGGGTADSSS SNHNLRQQTQ LLASGSGPVH PPGAGGGGGG GAAAHGGEHG 480 AGGAQLLSRV LSQQGSPGTV LGAAGGAGGG DAADVDDLLA LGLDLTAEDL MVLGVGSQQQ 540 PMDLLRHHQA QQQQQMHSQQ LLQHPSHHLL QPHLHPHLQP GSQPGSQVGL GSPLQSGAAA 600 HGSFSNASSG LLSPLGLGFG QVTHLLQHPQ GQHTANTAAP GLWGRGAGPA SWAASLLRPD 660 DGAVRTLSSP VPFCAEAGLQ QGQGLGRQAR AGGLGGMGNG FALLSVDPTL SPFCGASMGG 720 GGGGRGSGLV TEMPSLAEPG HVDVVTMGLD SGDLLDCMEV EGGPAAASGG AESFDLGLMR 780 GNHGGGGGQG REAARGGGGS GLAAGWPVAS SGGLEGAQQP DRLGPMLRL

Sequence ? help Back to Top

Protein Sequence Length: 829 aa Download sequence

MDEGSPGSPG GQAAKGVDTH GRLARSRSLS KGTAALSVLK SSTKLHQRRG SASHARFVEE  60
EEGSQDDEEG SQDDGSRRRN GGASGPAVSK AVKQLATDGG RRNAARGEWS CAEEMVLARK  120
HMELGNKWTN ISTFLPARSD NDVKNIWHST LRSKNTDRRS FLRTYARAVR DCANDGDARR  180
QAYDMAQRMC GSPQAIELAL AQVQQQYQQH LVAGQQPDDA PEPSQSPEHD QQQQQGELER  240
ELSRGGLGAP LGLQYDPREQ SPLLQMLQQQ QRLEEPQLEA RRSGTCSRSN SVAGEQSALL  300
HAGTGAKGRL SPCPSPRPKR QQRTPAPSAS PLDALDAAAA AGGGLAALGG LHPSLILAQR  360
DATHFRSYSY SHAHLAPGED SLRSLPSAGR HSDLLDSSCL ARLSALQLAD QRQRQHLQQQ  420
LGAGGAAGAG GGGGTADSSS SNHNLRQQTQ LLASGSGPVH PPGAGGGGGG GAAAHGGEHG  480
AGGAQLLSRV LSQQGSPGTV LGAAGGAGGG DAADVDDLLA LGLDLTAEDL MVLGVGSQQQ  540
PMDLLRHHQA QQQQQMHSQQ LLQHPSHHLL QPHLHPHLQP GSQPGSQVGL GSPLQSGAAA  600
HGSFSNASSG LLSPLGLGFG QVTHLLQHPQ GQHTANTAAP GLWGRGAGPA SWAASLLRPD  660
DGAVRTLSSP VPFCAEAGLQ QGQGLGRQAR AGGLGGMGNG FALLSVDPTL SPFCGASMGG  720
GGGGRGSGLV TEMPSLAEPG HVDVVTMGLD SGDLLDCMEV EGGPAAASGG AESFDLGLMR  780
GNHGGGGGQG REAARGGGGS GLAAGWPVAS SGGLEGAQQP DRLGPMLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56160.1	2e-10	MYB family protein