PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PNH02115.1

Organism

Tetrabaena socialis

Taxonomic ID

47790

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Tetrabaenaceae; Tetrabaena

Family

C2H2

Protein Properties

Length: 456aa MW: 50373.5 Da PI: 8.1682

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PNH02115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.4e-05	42	66	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ F r+ +L+rH rtH PNH02115.1 42 YACDhpGCKAAFARSGDLTRHKRTH 66 789999******************9 PP
2	zf-C2H2	11.7	0.00079	72	96	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C +F ++ +L+ H rtH PNH02115.1 72 YACDhpGCEVTFAQNTSLTMHKRTH 96 789999******************9 PP
3	zf-C2H2	12.3	0.00052	102	126	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ F + +L++H rtH PNH02115.1 102 YACDhpGCKAAFVKSGDLTKHKRTH 126 789999******************9 PP
4	zf-C2H2	14.7	9.1e-05	132	156	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ F+ + nL +H rtH PNH02115.1 132 YACDyeGCDAAFTESGNLASHKRTH 156 789999******************9 PP
5	zf-C2H2	16.8	1.9e-05	162	186	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ +F+++ nL +H rtH PNH02115.1 162 YACDyeGCDAVFTQSGNLASHKRTH 186 789999******************9 PP
6	zf-C2H2	18.4	5.9e-06	192	216	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C C+ +F+++++Lk+H rtH PNH02115.1 192 YACDyeGCDAVFPTNDQLKKHKRTH 216 789999******************9 PP
7	zf-C2H2	16.1	3.3e-05	222	246	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C dCg F ++ +L +H rtH PNH02115.1 222 YACDyeDCGAAFAQSGSLASHKRTH 246 889999******************9 PP
8	zf-C2H2	12.7	0.00037	252	277	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C Cg F+++ +L+ H ++ H PNH02115.1 252 YACDyeSCGAAFTQSGHLTIHKSSlH 277 7899999**************99988 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MNSPLRPLNA PKETDGPGRE VTFAKSGDLT MHKRTHTGEK PYACDHPGCK AAFARSGDLT 60 RHKRTHTGEK PYACDHPGCE VTFAQNTSLT MHKRTHTGEK PYACDHPGCK AAFVKSGDLT 120 KHKRTHTGEK PYACDYEGCD AAFTESGNLA SHKRTHTGEK PYACDYEGCD AVFTQSGNLA 180 SHKRTHTGEK PYACDYEGCD AVFPTNDQLK KHKRTHTGEK PYACDYEDCG AAFAQSGSLA 240 SHKRTHTGEK PYACDYESCG AAFTQSGHLT IHKSSLHSPE GQARQKKQEQ RLARALDRAG 300 IPYKREHQID FRCIGGDAGF WARVDFVIVL HGRVIFLEVD EEQHKFGSYG SASCDMKRMS 360 RILESLADGG NTLPLVFLRY NPNVFTVNGK VVRKLKAARE AELVSLLGNS TSDAFSCARP 420 LVIQYMYYDV VGCHAAVTRD PEYNGHIAQC CARPIV

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MNSPLRPLNA PKETDGPGRE VTFAKSGDLT MHKRTHTGEK PYACDHPGCK AAFARSGDLT  60
RHKRTHTGEK PYACDHPGCE VTFAQNTSLT MHKRTHTGEK PYACDHPGCK AAFVKSGDLT  120
KHKRTHTGEK PYACDYEGCD AAFTESGNLA SHKRTHTGEK PYACDYEGCD AVFTQSGNLA  180
SHKRTHTGEK PYACDYEGCD AVFPTNDQLK KHKRTHTGEK PYACDYEDCG AAFAQSGSLA  240
SHKRTHTGEK PYACDYESCG AAFTQSGHLT IHKSSLHSPE GQARQKKQEQ RLARALDRAG  300
IPYKREHQID FRCIGGDAGF WARVDFVIVL HGRVIFLEVD EEQHKFGSYG SASCDMKRMS  360
RILESLADGG NTLPLVFLRY NPNVFTVNGK VVRKLKAARE AELVSLLGNS TSDAFSCARP  420
LVIQYMYYDV VGCHAAVTRD PEYNGHIAQC CARPIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	6e-24	C2H2 family protein