PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03570.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Nin-like

Protein Properties

Length: 978aa MW: 107120 Da PI: 5.5728

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.1e-29	600	651	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ POO03570.1 600 AEKNVSLNVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 651 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 978 aa Download sequence
MEHPFSSKEK ENEYWSSSRA QVENLASFDG VPRGMLSEDV FNSFSELLTF DAYAGWSNSP 60 AVTDQVSATY GLSSLPSTTY VPMDGSNFVE HNVGALPVTE VGGNFNLPRS SFNYGDKIVF 120 QPVDTQFEVS AQSNNANNSI AKHNNGSFQE NSEMGLVDST ICRPTRYSLD EKMLRALSFV 180 KESSGGGILA QVWVPVKRGD QLFLSTSEQP YLLDHMLAGY REVSRMYTFA TEGKPGCFPG 240 LPGRVFISKV PEWTSDVGYY KKNEYVRVEH AYNHQVRGSL ALPVFEPDPG VSCCAVLEIV 300 TTKEKSNFDT EMEIVFHALQ AVNLRTNPPP RLVPQCLSKN QKDALAEIID VLRAVCHAHR 360 LPLALTWIPC CYNEGAASEL AGLHVREGKT SSSEKYILCV EKSACYVNDS LMQGFAHACV 420 EHHLEEGQGL AGKALQSNLP FFFPDVKTYD ISEYPLVHHA RKFGLNAAVA IRLRSTYTGD 480 CDYILEFFLP VNMKGASEQQ LLLNNLSGTM QRICKCLRTV SDAEVGAISS DAFQEGSVPN 540 FMSLPGESSQ MVLSDSDLNS TDELPLKVSN RRNEGIEADG VHEQAIRGSR RQTEKKRNTA 600 EKNVSLNVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT 660 VLDSVQGVEG GLKFDPTTGG LVAAGSIAQE LDTKKSLFFI EKTSSLQNSD PLSAVKLEED 720 ECCTGGVDPN SGEIRKPNIV ASTNSTKDSK IAIEAGSRLP ICDARSGAFS DKACLGSYHS 780 KEGKTSSQSK CSSKFENSKY YHVSQSSGSL GVGDEMDTAG DGDDELIEHN LPASSSMTDS 840 SNGCGSMLHV SSSSSLSQSF EERKHPKGKM SSGDNGSKII VKATYREDTV RFKFDTSTGC 900 SQLYEEVAKR FKLQTGTFQL KYLDDEEEWV MLVSDMDLQE CLEILDDIGT QSVKFQVRDM 960 PCAVGSSGSS NCFLAGGS

Sequence ? help Back to Top

Protein Sequence Length: 978 aa Download sequence

MEHPFSSKEK ENEYWSSSRA QVENLASFDG VPRGMLSEDV FNSFSELLTF DAYAGWSNSP  60
AVTDQVSATY GLSSLPSTTY VPMDGSNFVE HNVGALPVTE VGGNFNLPRS SFNYGDKIVF  120
QPVDTQFEVS AQSNNANNSI AKHNNGSFQE NSEMGLVDST ICRPTRYSLD EKMLRALSFV  180
KESSGGGILA QVWVPVKRGD QLFLSTSEQP YLLDHMLAGY REVSRMYTFA TEGKPGCFPG  240
LPGRVFISKV PEWTSDVGYY KKNEYVRVEH AYNHQVRGSL ALPVFEPDPG VSCCAVLEIV  300
TTKEKSNFDT EMEIVFHALQ AVNLRTNPPP RLVPQCLSKN QKDALAEIID VLRAVCHAHR  360
LPLALTWIPC CYNEGAASEL AGLHVREGKT SSSEKYILCV EKSACYVNDS LMQGFAHACV  420
EHHLEEGQGL AGKALQSNLP FFFPDVKTYD ISEYPLVHHA RKFGLNAAVA IRLRSTYTGD  480
CDYILEFFLP VNMKGASEQQ LLLNNLSGTM QRICKCLRTV SDAEVGAISS DAFQEGSVPN  540
FMSLPGESSQ MVLSDSDLNS TDELPLKVSN RRNEGIEADG VHEQAIRGSR RQTEKKRNTA  600
EKNVSLNVLQ QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLRKIQT  660
VLDSVQGVEG GLKFDPTTGG LVAAGSIAQE LDTKKSLFFI EKTSSLQNSD PLSAVKLEED  720
ECCTGGVDPN SGEIRKPNIV ASTNSTKDSK IAIEAGSRLP ICDARSGAFS DKACLGSYHS  780
KEGKTSSQSK CSSKFENSKY YHVSQSSGSL GVGDEMDTAG DGDDELIEHN LPASSSMTDS  840
SNGCGSMLHV SSSSSLSQSF EERKHPKGKM SSGDNGSKII VKATYREDTV RFKFDTSTGC  900
SQLYEEVAKR FKLQTGTFQL KYLDDEEEWV MLVSDMDLQE CLEILDDIGT QSVKFQVRDM  960
PCAVGSSGSS NCFLAGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein