PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G43500.1
Common NameNLP8, T1O24.24
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Nin-like
Protein Properties Length: 947aa    MW: 104884 Da    PI: 5.371
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G43500.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK78.95.6e-25588651252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLg.............vclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek++sl+ l+++Fs+++kdAAk+Lg              c+T+LKriCRq+GI+RWP+Rki+++
  AT2G43500.1 588 EKNVSLSALQQHFSGSLKDAAKSLGgetsayfqawvyfFCPTTLKRICRQHGIMRWPSRKINKV 651
                  89************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.834577671IPR003035RWP-RK domain
PfamPF020422.8E-25590651IPR003035RWP-RK domain
SuperFamilySSF542777.52E-23835933No hitNo description
Gene3DG3DSA:3.10.20.2404.1E-23845926No hitNo description
PROSITE profilePS5174521.617847929IPR000270PB1 domain
SMARTSM006666.5E-25847929IPR000270PB1 domain
CDDcd064078.38E-39848928No hitNo description
PfamPF005643.6E-18850928IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 947 aa     Download sequence    Send to blast
MENPFASREK GFGNYSDFPT EQMDGLSSNF GSGVRNLISD DMFNPSSELM NFDSLAAWCN  60
SPSATDILFA QYGLSNSQPM PFGAFTSFHV ADPKATSLTR SFYDLESSYY GEERSSAQEM  120
NSQFHRSSDS DELSGKRRKV VNQKIGFPNV LNCTIPRSLS HSLDEKMLKA LSLFMESSGS  180
GEGILAQVWT PIKTGDQYLL STCDQAYLLD PRFSQYREVS RRFTFAAEAN QCSFPGLPGR  240
VFISGVPEWT SNVMYYKTDE YLRMKHAIDN EVRGSIAIPI LEASGTSCCA VMELVTSKEK  300
PNFDMEMDSV CRALQAVNLR TAAIPRPQYL SSSQRDALAE IQDVLRTVCH AHKLPLALAW  360
IPCRKDQSIR VSGQKSGENC ILCIEETACY VNDMEMEGFV HACLEHCLRE KEGIVGKAFI  420
SNQPFFSSDV KAYDISEYPI VQHARKYGLN AAVAIKLRST YTGEDDYILE LFLPVSMKGS  480
LEQQLLLDSL SGTMQRICRT LRTVSEVGST KKEGTKPGFR SSDMSNFPQT TSSENFQTIS  540
LDSEFNSTRS MFSGMSSDKE NSITVSQGTL EQDVSKARTP EKKKSTTEKN VSLSALQQHF  600
SGSLKDAAKS LGGETSAYFQ AWVYFFCPTT LKRICRQHGI MRWPSRKINK VNRSLRKIQT  660
VLDSVQGVEG GLKFDSATGE FIAVRPFIQE IDTQKGLSSL DNDAHARRSQ EDMPDDTSFK  720
LQEAKSVDNA IKLEEDTTMN QARPGSFMEV NASGQPWAWM AKESGLNGSE GIKSVCNLSS  780
VEISDGMDPT IRCSGSIVEP NQSMSCSISD SSNGSGAVLR GSSSTSMEDW NQMRTHNSNS  840
SESGSTTLIV KASYREDTVR FKFEPSVGCP QLYKEVGKRF KLQDGSFQLK YLDDEEEWVM  900
LVTDSDLQEC LEILHGMGKH SVKFLVRDLS APLGSSGGSN GYLGTGL
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible260540_at0.0
Expression AtlasAT2G43500-
AtGenExpressAT2G43500-
ATTED-IIAT2G43500-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. Genetic analysis shows that NLP8-mediated promotion of seed germination by nitrate requires CYP707A2.
    [PMID: 27731416]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G43500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G43500
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023350.0AC002335.3 Arabidopsis thaliana chromosome 2 clone T1O24 map CIC10F02, complete sequence.
GenBankAY1025620.0AY102562.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBankAY1025630.0AY102563.1 Arabidopsis thaliana hypothetical protein (At2g43500/T1O24.24) mRNA, complete cds.
GenBankAY6492510.0AY649251.1 Arabidopsis thaliana hypothetical protein (At2g43500) gene, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001154573.10.0Plant regulator RWP-RK family protein
SwissprotO228640.0NLP8_ARATH; Protein NLP8
TrEMBLA0A1P8B2Q90.0A0A1P8B2Q9_ARATH; Plant regulator RWP-RK family protein
STRINGAT2G43500.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22992768
Representative plantOGRP2991697
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Maruyama-Nakashita A,Inoue E,Watanabe-Takahashi A,Yamaya T,Takahashi H
    Transcriptome profiling of sulfur-responsive genes in Arabidopsis reveals global effects of sulfur nutrition on multiple metabolic pathways.
    Plant Physiol., 2003. 132(2): p. 597-605
    [PMID:12805590]
  3. Scheible WR, et al.
    Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen.
    Plant Physiol., 2004. 136(1): p. 2483-99
    [PMID:15375205]
  4. Schauser L,Wieloch W,Stougaard J
    Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus.
    J. Mol. Evol., 2005. 60(2): p. 229-37
    [PMID:15785851]
  5. Xiao YL, et al.
    Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.
    Plant Physiol., 2005. 139(3): p. 1323-37
    [PMID:16244158]
  6. Yan D, et al.
    NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis.
    Nat Commun, 2016. 7: p. 13179
    [PMID:27731416]