PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO03135.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 536aa MW: 55566.6 Da PI: 8.8992

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO03135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H POO03135.1 70 FVCEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	15.6	4.5e-05	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ POO03135.1 146 WKCERCSKKYAVQSDWKAHMKTC 168 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MGELLENSSP MAVSTASAGD ASVSSSGYQT TPLPVEVVPP KKKRNLPGMP DPDAEVIALS 60 PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEVRKRV YVCPEASCVH 120 HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL 180 FSRRDSFITH RAFCDALAEE SARSHQTLAI SSEAGNPNAK VMVASPPPPP LTPSTTVVSP 240 ALSIQSSELP ENAIGLSPPT QAASTCLTTN ATAISICSSS NGSSTSTVFA SIFAPSSVAA 300 VAQPPQTSAN SSFSHLMGRS HCSTTLPTVA ALEPTSLSLS TSLYLSNNGG SSLFQAPDQP 360 EHRLFAPSAP QPAAMSATAL LQKAAQMGAA ASNASLLCSF GLTTSSSSSP SGKDSVASQW 420 NGTEIKQESV ASSVAAGLGL GLQSGGNSGL TDLVMGPALT FGSRPMTRDL LGLSIGGGGG 480 GGASTGGLSA LLNSFGGSGG FDIAAPSSYG GGGGRSSPRD TWEGPPERKT NGPALL

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MGELLENSSP MAVSTASAGD ASVSSSGYQT TPLPVEVVPP KKKRNLPGMP DPDAEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTTKEVRKRV YVCPEASCVH  120
HNPARALGDL TGIKKHFCRK HGEKKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAEE SARSHQTLAI SSEAGNPNAK VMVASPPPPP LTPSTTVVSP  240
ALSIQSSELP ENAIGLSPPT QAASTCLTTN ATAISICSSS NGSSTSTVFA SIFAPSSVAA  300
VAQPPQTSAN SSFSHLMGRS HCSTTLPTVA ALEPTSLSLS TSLYLSNNGG SSLFQAPDQP  360
EHRLFAPSAP QPAAMSATAL LQKAAQMGAA ASNASLLCSF GLTTSSSSSP SGKDSVASQW  420
NGTEIKQESV ASSVAAGLGL GLQSGGNSGL TDLVMGPALT FGSRPMTRDL LGLSIGGGGG  480
GGASTGGLSA LLNSFGGSGG FDIAAPSSYG GGGGRSSPRD TWEGPPERKT NGPALL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-113	C2H2 family protein