PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02743.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 360aa MW: 39641.4 Da PI: 6.2321

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.9	3.6e-43	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++Cv+apyfp ++p+kf nvhk+FGasnv+kll++l+ e+reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l+q++++l+ +k+ POO02743.1 11 PCAACKIQRRKCTQECVFAPYFPPDNPQKFSNVHKVFGASNVSKLLNELKAEHREDAVNSLAYEADARLRDPVYGCVGLISILQHRLKQVHTDLVNAKQ 109 7**********************************************************************************************9998 PP DUF260 100 e 100 e POO02743.1 110 E 110 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MSSSSSTSNS PCAACKIQRR KCTQECVFAP YFPPDNPQKF SNVHKVFGAS NVSKLLNELK 60 AEHREDAVNS LAYEADARLR DPVYGCVGLI SILQHRLKQV HTDLVNAKQE LATYIGPQAM 120 FPIFQTPPYM PQGNPSSSTS TVYQYNTVPP MMSGFQTGPP PRNRGQLVIR EPQAQAQPPP 180 VQAQAPQSHL QIFEAQQVAS AITARDPQQE FLMPGGGLDQ KIVFQQQLQQ YQPPLGYIAQ 240 PVNPQSMGRF ETGFDPRVGP PDHETAAGFI GQMGSGVSPM EPTLGLGSDF GNNAYNQVQP 300 VQAESDQQQQ QQHHSSLNQL HDEQVMFETP QSPLLQLGPQ PQLWNKLEGG EDRRVGPPSF

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MSSSSSTSNS PCAACKIQRR KCTQECVFAP YFPPDNPQKF SNVHKVFGAS NVSKLLNELK  60
AEHREDAVNS LAYEADARLR DPVYGCVGLI SILQHRLKQV HTDLVNAKQE LATYIGPQAM  120
FPIFQTPPYM PQGNPSSSTS TVYQYNTVPP MMSGFQTGPP PRNRGQLVIR EPQAQAQPPP  180
VQAQAPQSHL QIFEAQQVAS AITARDPQQE FLMPGGGLDQ KIVFQQQLQQ YQPPLGYIAQ  240
PVNPQSMGRF ETGFDPRVGP PDHETAAGFI GQMGSGVSPM EPTLGLGSDF GNNAYNQVQP  300
VQAESDQQQQ QQHHSSLNQL HDEQVMFETP QSPLLQLGPQ PQLWNKLEGG EDRRVGPPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-68	LBD family protein