PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02574.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 540aa MW: 56195 Da PI: 9.0908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H POO02574.1 66 FICEICNKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.1	0.0012	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + POO02574.1 142 WKCDKCSKKYAVQSDWKAHSKIC 164 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MPTELDNSST ASGEASVSSS GNQTGPTPAP PPKSTAKKKR NLPGMPDPDA EVIALSPKTL 60 LATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVKKRVYVCP ESTCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR 180 DSFITHRAFC DALAEESAKT QNPTPAQNQT SAQNQTRTAG NMKSESETQV RTVKSSSPPP 240 PPPPPPPAPL VAPAAPPSSS VPSGPPQSTG VLSSTLPIQT PAELPENPPR PLEEAPSAAT 300 GLSGSSSSST TSSSSNGSTS STVFASLFAS STTSASLQPP QPPAFTDLIR AMSRPDCPTD 360 LAPSSSLEPI SLGLSTSHGS SIFGTAGQER RQYAPPPQPA MSATALLQKA AQMGAAATNA 420 SLLRGLGIVS SSSSSGRQEN LQWPQQQVEP DSNSVPPGLG LGLPCDGSSG LKELMMGTPS 480 MFGPKQTTLD FLGLGMAAGG TPSGGLSALI TSIGGGLDVA AAAASFGGGE FSGKDIGRSS

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MPTELDNSST ASGEASVSSS GNQTGPTPAP PPKSTAKKKR NLPGMPDPDA EVIALSPKTL  60
LATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVKKRVYVCP ESTCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESAKT QNPTPAQNQT SAQNQTRTAG NMKSESETQV RTVKSSSPPP  240
PPPPPPPAPL VAPAAPPSSS VPSGPPQSTG VLSSTLPIQT PAELPENPPR PLEEAPSAAT  300
GLSGSSSSST TSSSSNGSTS STVFASLFAS STTSASLQPP QPPAFTDLIR AMSRPDCPTD  360
LAPSSSLEPI SLGLSTSHGS SIFGTAGQER RQYAPPPQPA MSATALLQKA AQMGAAATNA  420
SLLRGLGIVS SSSSSGRQEN LQWPQQQVEP DSNSVPPGLG LGLPCDGSSG LKELMMGTPS  480
MFGPKQTTLD FLGLGMAAGG TPSGGLSALI TSIGGGLDVA AAAASFGGGE FSGKDIGRSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2 family protein