PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO02487.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 447aa MW: 48695.9 Da PI: 7.4189

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO02487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.5	3.4e-13	136	182	1	53
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 s+y+GV++++++grW+++I+d + k+++lg f+t Aa+ +++ l POO02487.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDT-ALAAASKEEFVHIL 182 78*****************......55********.88887777776655 PP
2	AP2	41.7	3e-13	194	244	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + k+++lg f+++ eAa+a+++a+ k +g POO02487.1 194 SKYRGVTLHK-CGRWEARMGQF----MGkKYIYLGLFDSEVEAARAYDKAAIKCNG 244 89******.7**5554....224******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MLDLNLNVVV SSDSAASDSA DKPLESSGSF NSSSNLTADD DEAAADATYS FGILNHQNDD 60 VDHHRGSFAR TIQFFPVTAS VAQSSSGSRR QWLGLSCLEG NTSTTTAYGG PAEQRIAPLN 120 QNPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAL AAASKEEFVH 180 ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFMGKKYI YLGLFDSEVE AARAYDKAAI 240 KCNGREAVTN FEPSSYDGEM MSEADYEVLS SAGTGGNQSL DLNLGIAPLS VSNGRKENVE 300 ANGFYFEQGC SDIPLHMRER IENFASVGPK LPHGTRMAPE HCSIMSGMNS NFFPNNMERA 360 IERGVDVNSL PNWAWQIQGL NGRAAVPPVP LFSTAASSGF PSSTTTSSSS SPAAGSQLHF 420 PNASILHHHF PPSITNTNTL PHFYCRS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MLDLNLNVVV SSDSAASDSA DKPLESSGSF NSSSNLTADD DEAAADATYS FGILNHQNDD  60
VDHHRGSFAR TIQFFPVTAS VAQSSSGSRR QWLGLSCLEG NTSTTTAYGG PAEQRIAPLN  120
QNPVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAL AAASKEEFVH  180
ILRRHSTGFS RGSSKYRGVT LHKCGRWEAR MGQFMGKKYI YLGLFDSEVE AARAYDKAAI  240
KCNGREAVTN FEPSSYDGEM MSEADYEVLS SAGTGGNQSL DLNLGIAPLS VSNGRKENVE  300
ANGFYFEQGC SDIPLHMRER IENFASVGPK LPHGTRMAPE HCSIMSGMNS NFFPNNMERA  360
IERGVDVNSL PNWAWQIQGL NGRAAVPPVP LFSTAASSGF PSSTTTSSSS SPAAGSQLHF  420
PNASILHHHF PPSITNTNTL PHFYCRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	4e-78	AP2 family protein