PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01958.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 535aa MW: 59461.1 Da PI: 8.5397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.3e-05	104	124	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F ++ L H+++H POO01958.1 104 CRECGKGFQSWKALFGHMKRH 124 9*******************9 PP
2	zf-C2H2	11.7	0.00081	447	469	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H POO01958.1 447 HECPICLKVFPSGQALGGHKRSH 469 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
MEEGPEFKHA CKFCNKSFPC GRSLGGHMRS HLTNNSAETN EKFSKRSKIL SVNNGDGGSK 60 TSHNEACFEA GPNLSYGLRE NPKKTWRLAD SSTEETSVFE NKLCRECGKG FQSWKALFGH 120 MKRHSEKERA SMNNSLEEQD SWTTANQKMV MDSQSDNETM TPNRKRRSKR RTRYMGTTNS 180 SSFSVVNNGS SSVSEIELEQ EEVAMCLMML SRDGNHWGGS KSVAESSDNF SESSKAPSSK 240 NAGKTSGTDG SEISKSKKFN AKTNEHGKLD SGFSKFWSRM NGTEVKDKIK MKFQKDESEF 300 DQLGSKKYLN SSKRSLDHAH YDPELRSDSL KKLVPDVSDR GMCKISHKRR KFECTTCNKV 360 FHSYQALGGH RASHKKTKGC FASIIDSSEN SIETDNISPE PTADDDDHHH KNLIDHHDTP 420 DAGADRKCDR EVEKISTVVS KKSGKGHECP ICLKVFPSGQ ALGGHKRSHL IGANSDAKSS 480 QTIVIEKPIP GIRDFLDLNL PAPDEEDSNG HVASLKPWWA GTTHKHEALV GLISN

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

MEEGPEFKHA CKFCNKSFPC GRSLGGHMRS HLTNNSAETN EKFSKRSKIL SVNNGDGGSK  60
TSHNEACFEA GPNLSYGLRE NPKKTWRLAD SSTEETSVFE NKLCRECGKG FQSWKALFGH  120
MKRHSEKERA SMNNSLEEQD SWTTANQKMV MDSQSDNETM TPNRKRRSKR RTRYMGTTNS  180
SSFSVVNNGS SSVSEIELEQ EEVAMCLMML SRDGNHWGGS KSVAESSDNF SESSKAPSSK  240
NAGKTSGTDG SEISKSKKFN AKTNEHGKLD SGFSKFWSRM NGTEVKDKIK MKFQKDESEF  300
DQLGSKKYLN SSKRSLDHAH YDPELRSDSL KKLVPDVSDR GMCKISHKRR KFECTTCNKV  360
FHSYQALGGH RASHKKTKGC FASIIDSSEN SIETDNISPE PTADDDDHHH KNLIDHHDTP  420
DAGADRKCDR EVEKISTVVS KKSGKGHECP ICLKVFPSGQ ALGGHKRSHL IGANSDAKSS  480
QTIVIEKPIP GIRDFLDLNL PAPDEEDSNG HVASLKPWWA GTTHKHEALV GLISN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	378	KRRKFECTTCNKVFHSYQALGGHRASHKKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	6e-49	C2H2 family protein