PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G26610.1 | ||||||||
Common Name | T1K7.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 455aa MW: 51131.3 Da PI: 9.6361 | ||||||||
Description | C2H2-like zinc finger protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00075 | 399 | 421 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H AT1G26610.1 399 HECPICFRVFKSGQALGGHKRSH 421 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 5 | 35 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 6 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.0E-5 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-4 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.41E-7 | 94 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.4E-4 | 94 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.41E-7 | 394 | 421 | No hit | No description |
Pfam | PF13912 | 3.9E-10 | 399 | 421 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 399 | 421 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 399 | 421 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 401 | 421 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MEQFKERKFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDEADKLKMI DENGGQSSYG 60 LRENPKKNKR FVDHRQIMAL KQQQQQQQLQ ELRRCRECGK GFVSSKALCG HMACHSEREK 120 IVMDSQSDTE ASSSPIRRRS KRVVVKPHHK AAFVVGGNGI MNQSISASSD ASEIEPEQEE 180 MARSLMMLSR DSSFKKGHNS LAESSDNNSV ILETKSSSGE QVKMFNVKNV EELCKKNKLV 240 VDNQMRSGEE NGDVHYDSDN SDSGYFRNGP KKLDSDVSVD GFFRNKTIMG SGSGFNSSPT 300 KQDRDMNRFR KEWYKEGGSG SGSGSGRSST KYDLRKSKRG FPSHGRKKIK YEFTESVYDS 360 GEHSLETDSC ADTNRTIKIH SKSPMVKKAN GAKKKSKGHE CPICFRVFKS GQALGGHKRS 420 HFIGNQEHRT LVIQHQVAHE MHTLIDLNLP APIDE |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42562332 | 0.0 | ||||
Genevisible | 260997_at | 0.0 | ||||
Expression Atlas | AT1G26610 | - | ||||
AtGenExpress | AT1G26610 | - | ||||
ATTED-II | AT1G26610 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G26610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G26610 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1K7 | 0.0 | AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173983.1 | 0.0 | C2H2-like zinc finger protein | ||||
TrEMBL | Q9FZE5 | 0.0 | Q9FZE5_ARATH; C2H2-like zinc finger protein | ||||
STRING | AT1G26610.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 | Representative plant | OGRP5450 | 7 | 16 |
Link Out ? help Back to Top | |
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Phytozome | AT1G26610.1 |
Entrez Gene | 839201 |
iHOP | AT1G26610 |
wikigenes | AT1G26610 |
Publications ? help Back to Top | |||
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