PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO01450.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 470aa MW: 52010.2 Da PI: 4.9129

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO01450.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk Fs+ L H r H POO01450.1 25 HVCTICGKGFSSGKALGGHKRFH 47 79**************9999988 PP
2	zf-C2H2	15.3	5.9e-05	87	107	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F++ L H+r+H POO01450.1 87 CCVCGKDFPSTKALSGHMRSH 107 99******************9 PP
3	zf-C2H2	14	0.00015	329	351	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+ksF++ L H +tH POO01450.1 329 YKCSSCDKSFPTFQALGGHRSTH 351 9***************9999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MEKNGQVFID GGSSSLEVND PLLTHVCTIC GKGFSSGKAL GGHKRFHVQT ERRAAASTHD 60 ECTNNEFKTM KAKNPNMKVA GTNENLCCVC GKDFPSTKAL SGHMRSHPER EWRGIQPPMM 120 LASERICSHD AQKPKSDSND DDADDDDDDD DDDDDDEEEE DDDDEEEGED DDDYDHHINK 180 TVSTAAIAAV DLSEIIPPSW SKTDRRGRTV NPAVAAADGL LNLSRSGDWW LLKKKKKKLK 240 VRAVSENGTL LRFSTTTTTS GIDTCNSEEK HVLVNDQPFD VRVMKKKKIK YCLEEKKRKS 300 ASISGSIESD QENVSKKKVS TSTTTTNLYK CSSCDKSFPT FQALGGHRST HNKDNYKKSS 360 TNSKKEFQVV ETTNPKLTNI CGEIEDRKFS NVTTAEDSEM HNVRPHDVTL PTDLADSSMT 420 MTDDDQIASS SEVDTLGGNS STTKATARRV LEFDLNELPN CVMLGNEEKS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MEKNGQVFID GGSSSLEVND PLLTHVCTIC GKGFSSGKAL GGHKRFHVQT ERRAAASTHD  60
ECTNNEFKTM KAKNPNMKVA GTNENLCCVC GKDFPSTKAL SGHMRSHPER EWRGIQPPMM  120
LASERICSHD AQKPKSDSND DDADDDDDDD DDDDDDEEEE DDDDEEEGED DDDYDHHINK  180
TVSTAAIAAV DLSEIIPPSW SKTDRRGRTV NPAVAAADGL LNLSRSGDWW LLKKKKKKLK  240
VRAVSENGTL LRFSTTTTTS GIDTCNSEEK HVLVNDQPFD VRVMKKKKIK YCLEEKKRKS  300
ASISGSIESD QENVSKKKVS TSTTTTNLYK CSSCDKSFPT FQALGGHRST HNKDNYKKSS  360
TNSKKEFQVV ETTNPKLTNI CGEIEDRKFS NVTTAEDSEM HNVRPHDVTL PTDLADSSMT  420
MTDDDQIASS SEVDTLGGNS STTKATARRV LEFDLNELPN CVMLGNEEKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	239	LKKKKKKL
2	285	299	KKKKIKYCLEEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	2e-18	C2H2 family protein