PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G56200.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 493aa    MW: 54527.6 Da    PI: 5.063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G56200.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0016132152323
                  ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                  C  C k F++   L  H+r H
  AT5G56200.1 132 CCVCYKKFTSMKALYGHMRFH 152
                  *******************99 PP
2zf-C2H211.30.0011342364123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C  C+ksFs+   L  H  +H
  AT5G56200.1 342 HVCVTCNKSFSSYQALGGHRASH 364
                  79***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-475101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.93E-777152No hitNo description
PfamPF139122.8E-779101IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.92879106IPR007087Zinc finger, C2H2
SMARTSM003550.3979101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725130152IPR007087Zinc finger, C2H2
SMARTSM003554.6130152IPR015880Zinc finger, C2H2-like
PfamPF139120.0032132153IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6341364No hitNo description
PfamPF139122.9E-10342366IPR007087Zinc finger, C2H2
SMARTSM003550.38342364IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577342369IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6406433No hitNo description
PfamPF139123.8E-12411434IPR007087Zinc finger, C2H2
SMARTSM003550.36411433IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494411433IPR007087Zinc finger, C2H2
PROSITE patternPS000280413433IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000191anatomysynergid
PO:0000200anatomymicropylar endosperm
PO:0000230anatomyinflorescence meristem
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009031anatomysepal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0020090anatomyembryo sac central cell
PO:0020093anatomyantipodal cell
PO:0020100anatomyhypocotyl
PO:0025123anatomyembryo sac egg cell
PO:0001185developmental stageplant embryo globular stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDQLRGYKTN CGFSLGKPRF GSIKVKIPRI KPEIEEDQVE EDDEAKNIGL EEEENDHEAK  60
SMDLEQGDVE EEEGEEKKHI CCECGKRFVS GKALGGHKRI HVLETRKFSM MRPKMVSGMV  120
GRSERGDLEV ACCVCYKKFT SMKALYGHMR FHPDRGWKGV LPPPPLLPHP LGNSSSSTLD  180
HDDEFISSDY DDDDDFDDDD DDDDDENSEL WDSNLELENV VESIKGWSTK GKRGRRGDLK  240
FDEADLKDPP LEDVKDIDDA NGLLFLATTA EAAANLNVAE TSASRSVEEK YLEMVKKRKK  300
KQKRLSEMEK ESSTSTHHDH QLDQVVVVAA EEGGGAGARE KHVCVTCNKS FSSYQALGGH  360
RASHNKVKIL ENHQARANAE ASLLGTEAII TGLASAQGTN TSLSSSHNGD HVCNICHKSF  420
STGQALGGHK RCHWTAPVST VAPTTVPTAA PTVPATASSS QVTETVQEVK KLKRRVLEFD  480
LNELPPNEEE ERV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295299KKRKK
2295303KKRKKKQKR
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184238380.0
Genevisible247998_at0.0
Expression AtlasAT5G56200-
AtGenExpressAT5G56200-
ATTED-IIAT5G56200-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G56200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G56200
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230290.0AB023029.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24C1.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200431.10.0C2H2 type zinc finger transcription factor family
TrEMBLQ9FH190.0Q9FH19_ARATH; C2H2 type zinc finger transcription factor family
STRINGAT5G56200.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Representative plantOGRP1379534
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Day RC,Herridge RP,Ambrose BA,Macknight RC
    Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation.
    Plant Physiol., 2008. 148(4): p. 1964-84
    [PMID:18923020]
  4. Wuest SE, et al.
    Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes.
    Curr. Biol., 2010. 20(6): p. 506-12
    [PMID:20226671]
  5. Wang D, et al.
    Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte.
    BMC Plant Biol., 2010. 10: p. 110
    [PMID:20550711]