PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | POO01394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 139aa MW: 15511.1 Da PI: 10.2777 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 140.2 | 2.3e-43 | 27 | 108 | 88 | 170 |
YABBY 88 keesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ s+s+ ++++ e+ d+e pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl POO01394.1 27 ESGSSSKRNNKNAAFESVDHEQPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 108 3333344444444467889999*9999.9****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence |
MGATLQTVAP QDPQKQIPVS SEDSGNESGS SSKRNNKNAA FESVDHEQPR SPPIRPPEKR 60 QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNWAH FPHIHFGLKV DGTNNKQAKL 120 DKTIAGDHHQ GTQKTNGFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08465.1 | 7e-51 | YABBY family protein |