PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G08465.1 | ||||||||
Common Name | T27G7.15, YAB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20700.5 Da PI: 9.5578 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 262.2 | 7.6e-81 | 1 | 160 | 1 | 170 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++v++sse+vCyv+C+fC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++++a ++++l+ ++++++s v+++++as+s+s+ AT1G08465.1 1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPP---------IHQDLQPHRQHTTSLVTRKDCASSSRST 89 57899***********************************************999988876.........8*************************** PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++lsen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl AT1G08465.1 90 NNLSENIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 160 **************99.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-69 | 6 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.15E-7 | 105 | 153 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.6E-4 | 108 | 154 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000015 | anatomy | cotyledon primordium | ||||
PO:0000019 | anatomy | gynoecium primordium | ||||
PO:0000021 | anatomy | petal primordium | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSVDFSSERV CYVHCSFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQTSAP 60 PIHQDLQPHR QHTTSLVTRK DCASSSRSTN NLSENIDREA PRMPPIRPPE KRQRVPSAYN 120 RFIKEEIQRI KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQSVAGQKS 180 NGYY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.11866 | 0.0 | leaf| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT1G08465 | |||||
AtGenExpress | AT1G08465 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Member of the YABBY family of Arabidopsis proteins involved in the abaxial cell fate specification in lateral organs | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G08465.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G08465 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF136539 | 0.0 | AF136539.1 Arabidopsis thaliana YABBY2 (YABBY2) mRNA, complete cds. | |||
GenBank | BT004243 | 0.0 | BT004243.1 Arabidopsis thaliana clone RAFL15-27-O09 (R20923) At1g08465 mRNA, complete sequence. | |||
GenBank | DQ108871 | 0.0 | DQ108871.1 Arabidopsis thaliana clone 6413 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001077490.1 | 1e-137 | Plant-specific transcription factor YABBY family protein | ||||
Swissprot | Q9XFB0 | 1e-138 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | D7KIS2 | 1e-131 | D7KIS2_ARALL; Uncharacterized protein | ||||
STRING | AT1G08465.1 | 1e-137 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 | Representative plant | OGRP2210 | 12 | 36 |
Link Out ? help Back to Top | |
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Phytozome | AT1G08465.1 |
Entrez Gene | 3766682 |
iHOP | AT1G08465 |
wikigenes | AT1G08465 |