PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID POO01238.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 873aa    MW: 95665 Da    PI: 6.2993
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
POO01238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-182583357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  POO01238.1 25 KYVRYTAEQVEALERVYAECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                5679*****************************************************97 PP
2START154.87e-491663782204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHH....HHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvla....llveellddkeqWdetlakaetlevissg..galqlm 94 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++    +  +e+l+d+  W +++++ e+      g  g+++l+
  POO01238.1 166 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTkhnsQQIAEILKDRTSWFRDCRSLEVFTMFPAGngGTIELI 264
                 7899*************************************************99887333457899999999***********999999999****** PP

                 EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
       START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                 +++++a+++l+p Rdf+++Ry+  l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ 
  POO01238.1 265 YTQTYAPTTLAPaRDFWTLRYTTNLENGSLVVCERSLSGSGAGPNsaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSK 363
                 **************************************998888889999************************************************* PP

                 HHHHHHHHHHTXXXX CS
       START 190 aegaktwvatlqrqc 204
                 + ++k++ a+l++ +
  POO01238.1 364 VVAQKITIAALRYIR 378
                 **********99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    
MAMAVAQHRE SSSGSSINKH LDNGKYVRYT AEQVEALERV YAECPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLH TVSASAATTD ASCDSVVTTP QHSLRDANNP AGLLSIAEET LAEFLSKATG  180
TAVDWVQMPG MKPGPDSVGI FAISQSCSGV AARACGLVSL EPTKHNSQQI AEILKDRTSW  240
FRDCRSLEVF TMFPAGNGGT IELIYTQTYA PTTLAPARDF WTLRYTTNLE NGSLVVCERS  300
LSGSGAGPNS AAAAQFVRAE MLPSGYLIRP CEGGGSIIHI VDHLNLEAWS VPEVLRPLYE  360
SSKVVAQKIT IAALRYIRQI AQETSGEVVY SLGRQPAVLR TFSQRLIRGF NDAVNGFNDD  420
GWSIVNVDSA EDVTIAVNSA KNLSTIANPA NSLAFLGGVL CAKASMLLQN VPPAVLVRFL  480
REHRSEWADF NVDGYTAAAL KAGSYAYPGM RPTRFTGSQI IMPLGHTIEH EELLEVVRLE  540
GHSLAQEDAF LSRDIHLLQI CSGVDDNAVG ACSELVFAPI DEMFPDDAPL LPSGFRIIPL  600
ETKTVESRCF QPLKDMYMLS ESKDGLPAHR TLDLTSSLEV GSATTLASGD LSSSHNVRSL  660
LTIAFQFPFE SNLQDNVATM ARQYVRSVIS SVQRVAMAIS PSGLNPGVGP KLSQGSPEAL  720
TLANWICQSY RQVLLASYYM GSELVRSDSL GGGDSMLKNL WHHQDAILCC SLKSLPVFIF  780
ANQAGLDMLE TTLVALQDIT LDKIFDESGR KALFTDFAKL MQEGFACFPA GICMSTMGRH  840
VSFDQAVAWK VHASEEINAV HCLAFSFVNW SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein