PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

POO00661.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

HRT-like

Protein Properties

Length: 356aa MW: 40547.5 Da PI: 10.2231

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
POO00661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	29.6	1.2e-09	274	295	1	22
HRT-like 1 iCGviledGsvCkrqPvkgRKR 22 iCG+il++ s+C+r+Pv+gRKR POO00661.1 274 ICGAILSHDSICRRPPVEGRKR 295 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MVAGDPGVVV SRLKREDCKR TKHDRHFSKW EILVGPSDWE DYFLGKEGAE RYRVHNLPRD 60 SGPGVYELGI AVSRTGLGRD IGKLDPERIV VVYLGQAECV RTRLQRYGRS GAHLGSSYPI 120 GFPTDWKTAL QKGPGLFEEI LLSGYPIVFR WAPMQSKSDA IRTETQLLNT FDYAWNASIN 180 GSRRPDDILQ KLKKISSSTT HFSDIARKLV LFRHKQVGIR IEARKLPSAE NKFSTSNDDE 240 ESQYNFLFRV FKFGRSQPRL VLDRNTIMEE KTTICGAILS HDSICRRPPV EGRKRFLAMI 300 RKGCHRLQST ILSVRASLLH VDSSCLMAFL AEVRQFKETK GVLSTKEREF INPTLS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MVAGDPGVVV SRLKREDCKR TKHDRHFSKW EILVGPSDWE DYFLGKEGAE RYRVHNLPRD  60
SGPGVYELGI AVSRTGLGRD IGKLDPERIV VVYLGQAECV RTRLQRYGRS GAHLGSSYPI  120
GFPTDWKTAL QKGPGLFEEI LLSGYPIVFR WAPMQSKSDA IRTETQLLNT FDYAWNASIN  180
GSRRPDDILQ KLKKISSSTT HFSDIARKLV LFRHKQVGIR IEARKLPSAE NKFSTSNDDE  240
ESQYNFLFRV FKFGRSQPRL VLDRNTIMEE KTTICGAILS HDSICRRPPV EGRKRFLAMI  300
RKGCHRLQST ILSVRASLLH VDSSCLMAFL AEVRQFKETK GVLSTKEREF INPTLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-78	HRT-like family protein