PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT5G56780.1 | ||||||||
Common Name | ATET2, ET2, MIK19.25 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | HRT-like | ||||||||
Protein Properties | Length: 483aa MW: 54589.2 Da PI: 9.0529 | ||||||||
Description | effector of transcription2 | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 52.4 | 8.6e-17 | 277 | 307 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledG +C r+PvkgRKRC eHKG+R+ AT5G56780.1 277 VCGVLLEDGGCCIRSPVKGRKRCIEHKGQRV 307 7*****************************7 PP | |||||||
2 | HRT-like | 51.4 | 1.8e-16 | 337 | 367 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil d +C++ Pv+gRKRCe HKGmRi AT5G56780.1 337 VCGVILPDMEPCNKRPVPGRKRCEDHKGMRI 367 7*****************************7 PP | |||||||
3 | HRT-like | 29.2 | 1.6e-09 | 406 | 432 | 2 | 28 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +++++G +C+r+ kg KRC++HK AT5G56780.1 406 CEATTKNGLPCTRSSPKGSKRCWQHKE 432 99************************7 PP | |||||||
4 | HRT-like | 60.7 | 2.3e-19 | 453 | 482 | 2 | 31 |
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l++G +C+r+PvkgRKRCeeHKGmRi AT5G56780.1 453 CGVKLGNGLICERSPVKGRKRCEEHKGMRI 482 *****************************7 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000033 | Biological Process | regulation of seed dormancy process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0097100 | Molecular Function | supercoiled DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009046 | anatomy | flower | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 483 aa Download sequence Send to blast |
MEFGDGVSFA VVPTVFKRED YKRTKHDTVF SKWQVLIGSN DWEDFKNGKD GVGRYRVQNL 60 PRKSCPGLYE LGVAVIGQEQ CRKLEPDIVL ASYLGQAESV RSRLQRYGRS GAHLRNVNNL 120 NDCETIESPV KAVTGGLFED IFSKGGSILY RWAPMGSKRE AEATEGMLLS TFDYAWNKGS 180 NGERRQLDLL KKLGDREFMS KRKSGISRML FPFLRNQVGI RIKGEKHVLK EERKLTCDVD 240 EEKSNNFLTS ILKLTRSRPQ PVSDRFDEVD GSCSDIVCGV LLEDGGCCIR SPVKGRKRCI 300 EHKGQRVCRV SPEKQTPPKS EIFTGQDHHN HKDSDVVCGV ILPDMEPCNK RPVPGRKRCE 360 DHKGMRINAF LFLLNQTDRE KTVKDEKPDP ESHTESIEEE ALTRFCEATT KNGLPCTRSS 420 PKGSKRCWQH KEKTSSDTSP VYFQPEAAKN VACGVKLGNG LICERSPVKG RKRCEEHKGM 480 RIT |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.29366 | 0.0 | leaf |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 145359332 | 0.0 | ||||
Genevisible | 247974_at | 0.0 | ||||
Expression Atlas | AT5G56780 | - | ||||
AtGenExpress | AT5G56780 | - | ||||
ATTED-II | AT5G56780 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryogenesis, expressed in the embryo at the late torpedo/cotyledon stage, at the onset of maturation. Not expressed during early stages of seed development or in mature seeds. {ECO:0000269|PubMed:22226340}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of stems, hypocotyls, leaves and flowers. Expressed in the vascular bundles of xylem in shoot parenchyma cells. Expressed in the remnant cytoplasm of differentiated fiber cells and in protoxylem element of parenchymal cells. {ECO:0000269|PubMed:17991462}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Function -- GeneRIF ? help Back to Top | ||||||
---|---|---|---|---|---|---|
|
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT5G56780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: Reduced levels of lignin in leaves and stems (PubMed:17991462). Reduced seed germination rate (PubMed:22226340). {ECO:0000269|PubMed:17991462, ECO:0000269|PubMed:22226340}. |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT5G56780 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB013392 | 0.0 | AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_200489.2 | 0.0 | effector of transcription2 | ||||
Swissprot | F4K933 | 0.0 | ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | A0A178URY3 | 0.0 | A0A178URY3_ARATH; ET2 | ||||
STRING | AT5G56780.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2954 | 27 | 63 | Representative plant | OGRP5248 | 14 | 20 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT5G56780.1 |
Entrez Gene | 835780 |
iHOP | AT5G56780 |
wikigenes | AT5G56780 |