PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98763.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

Trihelix

Protein Properties

Length: 367aa MW: 39668.9 Da PI: 10.1505

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98763.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.4	2.5e-15	59	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + + + + ++p++++l+ PON98763.1 59 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRLD 141 5***********************************854444555566679***********99988876.......489888886 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MDKETNNQEN PSLLPNNTTA TAAAAAAIIV PKEESPRKPL SGGGGGGGVG TGDRLKRDEW 60 SEGAVSSLLE AYESKWVLRN RAKLKGHDWE DVARYVSSRA NCTKSPKTQT QCKNKIESMK 120 KRYRSESTAD ASSWPLYSRL DLLLRGNGAP AAAAVAVTVA ASAQTHPPPP PPPPMPPSLP 180 PSNNTPLMLL EPTPVAVAPL LQPPGPGPPP QNSHGSNGVE RVAKEDGTTN KILSDHASDR 240 NNSMDITSDS STPALYSEKA EKMRSSSRKA TAAANKIMKK KRKRKEEFEV AESIRWLAEA 300 VVKSEQARME AMRDIERMRV EAEAKRAEME LKRTEIIANT QLEIAKLFAS AGHVGKAVDS 360 SLRIGRN

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MDKETNNQEN PSLLPNNTTA TAAAAAAIIV PKEESPRKPL SGGGGGGGVG TGDRLKRDEW  60
SEGAVSSLLE AYESKWVLRN RAKLKGHDWE DVARYVSSRA NCTKSPKTQT QCKNKIESMK  120
KRYRSESTAD ASSWPLYSRL DLLLRGNGAP AAAAVAVTVA ASAQTHPPPP PPPPMPPSLP  180
PSNNTPLMLL EPTPVAVAPL LQPPGPGPPP QNSHGSNGVE RVAKEDGTTN KILSDHASDR  240
NNSMDITSDS STPALYSEKA EKMRSSSRKA TAAANKIMKK KRKRKEEFEV AESIRWLAEA  300
VVKSEQARME AMRDIERMRV EAEAKRAEME LKRTEIIANT QLEIAKLFAS AGHVGKAVDS  360
SLRIGRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	279	285	KKKRKRK
2	280	285	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-53	Trihelix family protein