PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON98618.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 433aa MW: 47015.8 Da PI: 7.5957

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON98618.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	281	303	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H PON98618.1 281 HECSICGAEFTSGQALGGHMRRH 303 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MEATAQEEVT TVSKEQTGLV VNKGKRTKRQ RPQSPLPFAA LPTNSSTGNG SGGSDNDDNN 60 DNNNNNRNAN SPSPATSAEI RDSTEEEDQD MANCLILLAQ GHSRRSPTPP KQLSPPPDAA 120 AAAVAEDGGG GGVGAYTKHN SRKFLETTQA PGAPGNNIKA AAGGYYVYEC RTCNRTFPSF 180 QALGGHRASH KKPKAAVADQ TVVLENKRNH HLFGLPSDDE DQTPLSNNNN NNNNNNNSYN 240 NKNNYNNISS TALSLQLSNN RSSTNLYGGS ANFINKANKV HECSICGAEF TSGQALGGHM 300 RRHRASVGTT TTSTALSLTT TTTNTNTTAA ATTQLMALDH QPNDNDHDHH NHNHNHNHNQ 360 RHHHHHHQQQ QQANKTRNVL SLDLDLNLPA PEDDQREPKF GFVAKQQQQQ QQQKQQQSST 420 LVFSAPALVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MEATAQEEVT TVSKEQTGLV VNKGKRTKRQ RPQSPLPFAA LPTNSSTGNG SGGSDNDDNN  60
DNNNNNRNAN SPSPATSAEI RDSTEEEDQD MANCLILLAQ GHSRRSPTPP KQLSPPPDAA  120
AAAVAEDGGG GGVGAYTKHN SRKFLETTQA PGAPGNNIKA AAGGYYVYEC RTCNRTFPSF  180
QALGGHRASH KKPKAAVADQ TVVLENKRNH HLFGLPSDDE DQTPLSNNNN NNNNNNNSYN  240
NKNNYNNISS TALSLQLSNN RSSTNLYGGS ANFINKANKV HECSICGAEF TSGQALGGHM  300
RRHRASVGTT TTSTALSLTT TTTNTNTTAA ATTQLMALDH QPNDNDHDHH NHNHNHNHNQ  360
RHHHHHHQQQ QQANKTRNVL SLDLDLNLPA PEDDQREPKF GFVAKQQQQQ QQQKQQQSST  420
LVFSAPALVD CHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10470.1	1e-39	C2H2 family protein