PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT3G10470.1 | ||||||||
Common Name | F13M14.25, F18K10.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 398aa MW: 42993.4 Da PI: 7.95 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00047 | 182 | 204 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H AT3G10470.1 182 YQCKTCDRTFPSFQALGGHRASH 204 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13 | 0.00032 | 261 | 283 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H AT3G10470.1 261 HECGICGAEFTSGQALGGHMRRH 283 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.42E-8 | 181 | 204 | No hit | No description |
Pfam | PF13912 | 2.4E-12 | 181 | 206 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 182 | 204 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.471 | 182 | 209 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 184 | 204 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.42E-8 | 256 | 283 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-4 | 259 | 285 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.6E-11 | 260 | 285 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.047 | 261 | 283 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.93 | 261 | 285 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 263 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025195 | anatomy | pollen tube cell | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001016 | developmental stage | L mature pollen stage | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 398 aa Download sequence Send to blast |
MEAAAEAVSA AREQSLILKG KRTKRQRPQS PIPFSIIPPM SSHEPDAEEE STSLVSKEKS 60 LNDEINNNNI KNNNNTLING VTSSSSASSS SNNNATLKAT ADEEDQDMAN CLILLAQGHS 120 LPHLQPQPHP QQQTRQLMMS YQDSGNNNNN AYRSSSRRFL ETSSSNGTTT NGGGGRAGYY 180 VYQCKTCDRT FPSFQALGGH RASHKKPKAA MGLHSNHDHK KSNYDDAVSL HLNNVLTTTP 240 NNNSNHRSLV VYGKGSNNKV HECGICGAEF TSGQALGGHM RRHRGAVVAA AAASTATVSV 300 AAIPATANTA LSLSPMSFDQ MSEGPIQAPV KRARSAVVSL DLDLNLPAPE DENRVNGLSF 360 ASKQEHEQEH EQTQQKKQRE EQKSLVLSSA PTLVDCHY |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
At.39920 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
Genevisible | 258967_at | 0.0 | ||||
Expression Atlas | AT3G10470 | - | ||||
AtGenExpress | AT3G10470 | - | ||||
ATTED-II | AT3G10470 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT3G10470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT3G10470 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 0.0 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 0.0 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_187658.1 | 0.0 | C2H2-type zinc finger family protein | ||||
TrEMBL | A0A384L0E9 | 0.0 | A0A384L0E9_ARATH; Uncharacterized protein | ||||
TrEMBL | Q7G8T1 | 0.0 | Q7G8T1_ARATH; C2H2-type zinc finger family protein | ||||
STRING | AT3G10470.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2231 | 27 | 75 | Representative plant | OGRP2350 | 10 | 35 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT3G10470.1 |
Entrez Gene | 820211 |
iHOP | AT3G10470 |
wikigenes | AT3G10470 |
Publications ? help Back to Top | |||
---|---|---|---|
|