PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON96873.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

WRKY

Protein Properties

Length: 409aa MW: 45048.1 Da PI: 6.0449

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON96873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.3	3.6e-29	143	204	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt++ gC ++k+v+rs+ed +++eitY+g+H+++ PON96873.1 143 LDDGFSWRKYGQKDILGAKYPRGYYRCTHRnvqGCLATKQVQRSDEDSTIFEITYRGRHTCT 204 59*************************98999************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDQNMGDWEQ KNLVNELTRG KELARQLQIH LNAANTAASA SSSSSSHETR EYLVQKILGS 60 YEKALSMLNW TSLPAGDHAL QPSPGVPVRM SESPPSLTGS PRSEDSDRDQ DNKDNIGSRK 120 RKSLPRWTRQ VRVDPGMGLE GPLDDGFSWR KYGQKDILGA KYPRGYYRCT HRNVQGCLAT 180 KQVQRSDEDS TIFEITYRGR HTCTQASHVL GTASSDQKQE PPTSNNSINI TNTIESHHHH 240 HHPPNNLLQP LEQTQQQTQD HTLSDFKSGL KVITEGLDSL DGQSSLISSF NLFASTANLN 300 NPKAEENPRQ YFAPNSMIND GFVGHGFSPS FVSPAASGTN YFSASQGGTH EFGVDHPQNF 360 DQQGSESEIA EIISAVTSAT STPTIGPDFQ FGHGEFDSNF TFDNSGSFF

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDQNMGDWEQ KNLVNELTRG KELARQLQIH LNAANTAASA SSSSSSHETR EYLVQKILGS  60
YEKALSMLNW TSLPAGDHAL QPSPGVPVRM SESPPSLTGS PRSEDSDRDQ DNKDNIGSRK  120
RKSLPRWTRQ VRVDPGMGLE GPLDDGFSWR KYGQKDILGA KYPRGYYRCT HRNVQGCLAT  180
KQVQRSDEDS TIFEITYRGR HTCTQASHVL GTASSDQKQE PPTSNNSINI TNTIESHHHH  240
HHPPNNLLQP LEQTQQQTQD HTLSDFKSGL KVITEGLDSL DGQSSLISSF NLFASTANLN  300
NPKAEENPRQ YFAPNSMIND GFVGHGFSPS FVSPAASGTN YFSASQGGTH EFGVDHPQNF  360
DQQGSESEIA EIISAVTSAT STPTIGPDFQ FGHGEFDSNF TFDNSGSFF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	7e-62	WRKY family protein