PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON93709.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28668.8 Da PI: 9.7323 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.9 | 6.6e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+y+s PON93709.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDYCS 59 8***********************************************96 PP | |||||||
2 | K-box | 87.8 | 2.2e-29 | 81 | 170 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e++ L+++++ Lq+ +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+kK+++l+++i+el +k + +++en +L kk PON93709.1 81 NPASEVKFWQREATTLRQQLQYLQECHRQLMGEELSGLSVKDLQNLENQLEMSLKGVRTKKDQILTDEIKELNRKGNLIHQENIELYKKA 170 4678899*******************************************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDYCSS 60 SMKAVIERYN KVKEEHHQLL NPASEVKFWQ REATTLRQQL QYLQECHRQL MGEELSGLSV 120 KDLQNLENQL EMSLKGVRTK KDQILTDEIK ELNRKGNLIH QENIELYKKA DLIQKENVEL 180 QRKAYGASDA NEASRSTSLG YTISNGYDAQ TPIHLQLSQP QPQPQPQPEP QSQPQKIKTS 240 PKAMILGLQL H |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-98 | MIKC_MADS family protein |