PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93327.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 325aa MW: 36639.7 Da PI: 6.5011

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.7	9.2e-39	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C+++C+lap fp +qpk f+n+hklFG+sn+lk++k+l++e++ +am s++y+A+ r rdPv+G++g i +l+ q+ ++++el+++++ PON93327.1 10 ACAACKYQRRRCSPECPLAPFFPPDQPKLFQNAHKLFGVSNILKIIKRLEPEQKATAMWSIIYQANERDRDPVHGCLGRICQLRYQIWHTEQELSAVHA 108 7**********************************************************************************************9997 PP DUF260 100 e 100 + PON93327.1 109 R 109 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MTLKGGTSQA CAACKYQRRR CSPECPLAPF FPPDQPKLFQ NAHKLFGVSN ILKIIKRLEP 60 EQKATAMWSI IYQANERDRD PVHGCLGRIC QLRYQIWHTE QELSAVHARL EMCRQQQHHH 120 QHQMMPSMAP HHHHDHDHQH HPQDLVINSQ LELGMAPPSN AVPILNNDHT PQPYNSHVMT 180 GFPMTQQHQQ AYSSNNASTL NSAAAFLDST EINSNNVGNP LWPQYPYSGT TNNGNNNCNS 240 SVAIQSQPLI GSQPLEIQQE VVQDYDEMPF FDTMDDRQSY IDSKEAYGQS SSEESVLKDT 300 TQSIDHAANN ELKNAAARLS LTSVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-50	LBD family protein