PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G47870.1 | ||||||||
Common Name | ASL29, LBD27, SCP, T23J7.200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 328aa MW: 37333.5 Da PI: 5.7248 | ||||||||
Description | LOB domain-containing protein 27 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121 | 6.7e-38 | 36 | 136 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e+++++am+s+++++ +r r Pv+G++gv ++lq + +++el++++ AT3G47870.1 36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVN 133 7**********************************************************************************************999 PP DUF260 99 eel 101 ++l AT3G47870.1 134 SQL 136 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.002 | 35 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-34 | 36 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003674 | Molecular Function | molecular_function |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0020048 | anatomy | microspore | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001013 | developmental stage | H late unicellular microspore stage | ||||
PO:0001059 | developmental stage | J bicellular pollen stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSNTKHIHKG LQERLLDLLL IALIVYMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE 60 QPKLFQNVHR LFGVRSIVKI LEKLDETQKP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY 120 MIWFAEEELK AVNSQLQLYR SQPQNGQNQN QNHNHNQMIH ELGSDHNKQQ EDVTSQQLDL 180 GMGLNVNNNQ SNVVTPFFSS LLPVSETQQP QMSYTYSCSE VNNNGYSPPA YNTDSGKEIL 240 TNNNNVWGDQ NRFLYNNNNG GGYSNQNESC HEMKSNGVMA IQSQLVNLQM VSNHQRVEEE 300 EADHEYDELH QFLDIIDDRQ SFGDSKEA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-24 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-24 | 32 | 139 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 240255531 | 0.0 | ||||
Expression Atlas | AT3G47870 | - | ||||
AtGenExpress | AT3G47870 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Required for normal cell division during pollen development. Mutant has extra cell in pollen of vegetative cell identity. Male gametophytic mutation. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G47870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G47870 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473862 | 0.0 | AB473862.1 Arabidopsis thaliana ASL29 mRNA for ASYMMETRIC LEAVES2-like 29 protein, complete cds. | |||
GenBank | AL049746 | 0.0 | AL049746.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_190371.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 0.0 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A178VH37 | 0.0 | A0A178VH37_ARATH; SCP | ||||
STRING | AT3G47870.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 | Representative plant | OGRP60 | 16 | 318 |
Link Out ? help Back to Top | |
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Phytozome | AT3G47870.1 |
Entrez Gene | 823943 |
iHOP | AT3G47870 |
wikigenes | AT3G47870 |