PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON93030.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 334aa MW: 37562.8 Da PI: 6.2029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON93030.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.6	0.0018	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++sF + L H++ H PON93030.1 4 HRCKLCHRSFANGRALGGHMKAH 26 79******************998 PP
2	zf-C2H2	12.9	0.00033	266	288	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F + L H r+H PON93030.1 266 FQCPYCYKVFGSGQALGGHKRSH 288 89***************999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MERHRCKLCH RSFANGRALG GHMKAHLATL PLPPKTNTAI DPPSSSSYSS PQEEEEEEEE 60 EVEVEEAEAE VEEEDKALAY GLRENPKKSF RLADPEFSFA VDAGSVIQDR ESETESSRNP 120 TRRRSKRNRR PFVAAEMKKA KLRRPSWVDS PAEPEPVSSV SDTSPEEDVA MCLMMLSRDV 180 WMRVENEEQD HHKTIIRAVN GPQQQEQEEE QEIVKLKRVG AKQKHRCEKC NKVFRSHQAM 240 CGHKKICFRN ETEAKNAGFG ADDKIFQCPY CYKVFGSGQA LGGHKRSHGH QLNSATSTGA 300 ISGSNYSGKH REGLIDLNLP APLEEDDFSV LSDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	130	RNPTRRRSKRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	5e-36	C2H2 family protein