PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON92156.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family HD-ZIP
Protein Properties Length: 295aa    MW: 32341.2 Da    PI: 8.5723
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON92156.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-19146200256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  PON92156.1 146 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 200
                 788899***********************************************98 PP
2HD-ZIP_I/II125.22.9e-40146235191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
   PON92156.1 146 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 235
                  69*************************************************************************************9.54 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MGFDDLCNTG LVLGLGFTAS ASSRKPSTTS TPTTTTSFEP SLTLGLSGGD PYSSSNNNNA  60
RKISNIIIDV NKGGSTTSAT CLHEEPVNNN HNNIDSYRQA SPHSAVSSFS GGGRVKRERD  120
LSSEEIEVEK VSSRISDEDE DGPNARKKLR LTKEQSALLE ESFKQHSTLN PKQKQALARQ  180
LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLSQP  240
LYMHMPAATL TMCPSCERIG GVGVGVGSDG ASKSPFSMAP KPHFYNPFTN PSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-83HD-ZIP family protein