PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON88872.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 525aa MW: 57362.8 Da PI: 4.7459

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON88872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k+F++ L H r+H PON88872.1 78 FKCQVCHKRFKSGKALGGHKRMH 100 89*******************99 PP
2	zf-C2H2	16.3	2.8e-05	155	175	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp+C k+F++ L H+r+H PON88872.1 155 CPICFKTFPSIKALFGHMRSH 175 ********************9 PP
3	zf-C2H2	14.4	0.00011	454	476	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H++ H PON88872.1 454 YVCSVCKRSFPSYQALGGHMSIH 476 9*******************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MDQELGSCDH QEISMEASTV KTSGDASNGR LCLKLKIPKP EPNKDNYEEK EEEEEEEEEK 60 EKEDEDEEDE ELVALLPFKC QVCHKRFKSG KALGGHKRMH NQQAAAATTS TSSTGLTNKI 120 NSISISSRTN ANFKATKESS APSGSTASSS CTNICPICFK TFPSIKALFG HMRSHPERTW 180 RGIEPPKPTT TTTNTTTTTS LPPLIPPKPT CSSISSTTDH PHPHQHDLDD DQNNNNVIHS 240 TAAAAGDPLA TKTWGVTAKR GRKSLTSSTT STAAASAITA SASRDVDDDD DDDDDDDEDD 300 DNDDEDDDDS GGCSGLEERM NEAVLDLMML ARASPANTNY NNRPPAPPKD HKNNIIKKRK 360 FGEEEDEMVD EDEDDEDYNS DSSNSSSQNS ILNWKLRMRK SRRKMKLVDD IDQLDLDLHP 420 DPEAEEKPKP KPKPKQPKAL VTKAISSSCS TSKYVCSVCK RSFPSYQALG GHMSIHNKTA 480 APAPAPAPAP APAPAPPPAA PRRLLNIDLN QPPPDEGNED HHQFS

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MDQELGSCDH QEISMEASTV KTSGDASNGR LCLKLKIPKP EPNKDNYEEK EEEEEEEEEK  60
EKEDEDEEDE ELVALLPFKC QVCHKRFKSG KALGGHKRMH NQQAAAATTS TSSTGLTNKI  120
NSISISSRTN ANFKATKESS APSGSTASSS CTNICPICFK TFPSIKALFG HMRSHPERTW  180
RGIEPPKPTT TTTNTTTTTS LPPLIPPKPT CSSISSTTDH PHPHQHDLDD DQNNNNVIHS  240
TAAAAGDPLA TKTWGVTAKR GRKSLTSSTT STAAASAITA SASRDVDDDD DDDDDDDEDD  300
DNDDEDDDDS GGCSGLEERM NEAVLDLMML ARASPANTNY NNRPPAPPKD HKNNIIKKRK  360
FGEEEDEMVD EDEDDEDYNS DSSNSSSQNS ILNWKLRMRK SRRKMKLVDD IDQLDLDLHP  420
DPEAEEKPKP KPKPKQPKAL VTKAISSSCS TSKYVCSVCK RSFPSYQALG GHMSIHNKTA  480
APAPAPAPAP APAPAPPPAA PRRLLNIDLN QPPPDEGNED HHQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-12	C2H2 family protein