PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87783.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

LBD

Protein Properties

Length: 274aa MW: 29414.1 Da PI: 7.3572

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87783.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134	5.9e-42	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vh+++Gasnv kll++l + +re+a+ sl+yeAear+rdPvyG+vg+i+ l+++l+q+++el+++k+ PON87783.1 9 PCAACKFLRRKCTQECVFAPYFPPDQPQKFACVHRVYGASNVAKLLNELATAHREEAVVSLAYEAEARLRDPVYGCVGFISVLHNRLKQVQTELNAAKK 107 7***********************************************************************************************998 PP DUF260 100 e 100 e PON87783.1 108 E 108 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence
MSSSSSHSPC AACKFLRRKC TQECVFAPYF PPDQPQKFAC VHRVYGASNV AKLLNELATA 60 HREEAVVSLA YEAEARLRDP VYGCVGFISV LHNRLKQVQT ELNAAKKELA AYIGPQAMLI 120 PSYSLSPLQP MLGISAAAAN IPGQGQQQLV IRDPANPLHQ QHQPQQILIE SAAQQHQQQV 180 RFNGGFDHMA VGPVGAVGVG GFNNQMNGGG GSPSGVGGGV MSPPSLGLQG SFDNNLFNNQ 240 MQAHQTGSHH PSLDYQLQAQ LLLHSQNKSE AEEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	6e-63	LBD family protein