PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON87437.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 360aa MW: 39721.3 Da PI: 7.4976

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON87437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.2	1.4e-08	91	115	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y ++C+FaH+ PON87437.1 91 FKTKLCCKFRA-GTCPYISNCNFAHS 115 69*******.***********8 PP
2	zf-CCCH	18.6	3.4e-06	165	190	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ PON87437.1 165 YKGRHCKKFYTEEGCPYGDNCTFLHD 190 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	239	264	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PON87437.1 239 WKTRICNKWELTGYCPFGSKCHFAHG 264 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEYGRESVVQ VIGGSGGGSE NWSGDQAIWA TEDDYRAWNN SETSGDTFSN SNYDQRQSQT 60 RSGSEPPSKK SKNSQDVTSS NRSKAIGKMF FKTKLCCKFR AGTCPYISNC NFAHSIEELR 120 RPPPNWQEIV AAHEEEKAVS SEPREEFQIP SVGSSSFVVE TPRSYKGRHC KKFYTEEGCP 180 YGDNCTFLHD EQSKNRESVA ISLGPGGYGG APSGANNNNN NNNNNNNNNN NSNNKPSNWK 240 TRICNKWELT GYCPFGSKCH FAHGSTELHR YGGGLVETDA RDASSVPTEN KQQGGVPPKA 300 PADTVVASVP SVPHSDVYHM GVPSQRSSIV LQRPGHRAHQ KWKGPDKISR IYGDWIDDVE

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEYGRESVVQ VIGGSGGGSE NWSGDQAIWA TEDDYRAWNN SETSGDTFSN SNYDQRQSQT  60
RSGSEPPSKK SKNSQDVTSS NRSKAIGKMF FKTKLCCKFR AGTCPYISNC NFAHSIEELR  120
RPPPNWQEIV AAHEEEKAVS SEPREEFQIP SVGSSSFVVE TPRSYKGRHC KKFYTEEGCP  180
YGDNCTFLHD EQSKNRESVA ISLGPGGYGG APSGANNNNN NNNNNNNNNN NSNNKPSNWK  240
TRICNKWELT GYCPFGSKCH FAHGSTELHR YGGGLVETDA RDASSVPTEN KQQGGVPPKA  300
PADTVVASVP SVPHSDVYHM GVPSQRSSIV LQRPGHRAHQ KWKGPDKISR IYGDWIDDVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-131	C3H family protein