PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85269.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 1521aa MW: 169939 Da PI: 8.796

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	1431	1453	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L++H r+H PON85269.1 1431 CPvkGCGKKFFSHKYLVQHRRVH 1453 9999*****************99 PP
2	zf-C2H2	11.8	0.00074	1489	1515	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C Cg++F+ s++ rH r+ H PON85269.1 1489 YVCAepGCGQTFRFVSDFSRHKRKtgH 1515 899999****************99666 PP

Sequence ? help Back to Top
Protein Sequence Length: 1521 aa Download sequence
MAASTLPPDP SPEVFSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEAST YGICKIVPPV 60 PPSPKKTVIA NLNKSLAARA GSSDRSGPKT PPTFTTRQQQ IGFCPRKPRP VQRPVWQSGE 120 HYTFQEFEAK AKGFEKGFLK KCAKKGGNGG GPSALEIETL YWKATVDKPF SVEYANDMPG 180 SAFAPVSAKK GREAGESVTL GETAWNMRAV SRSKGSLLRF MKEEIPGVTS PMVYVAMMFS 240 WFAWHVEDHD LHSLNYMHMG AGKTWYGVPR EAAVAFEEVV RVHGYGGEIN PLVTFSVLGE 300 KTTVMSPEVF IKAGVPCCRL VQNAGEFVVT FPRAYHTGFS HGFNCGEAAN IATPEWLRVA 360 KDAAIRRASI NYPPMVSHFQ LLYDLALALC SRIPVSISAE PRSSRLKDKK KGEGETVVKE 420 LFVQNVLQNN DLLHVLGKGS PIVLLPRSSS DISLCSKLRV GSQLRLNASS PLGSCNSREE 480 MKSSRSLISD DLMIDRKQDV DQVRDFYPVK GKLASLCEGS WVPSLRGNKS TSTLDSKTPN 540 MNIEGESNVD GDRLSDQRLF SCVTCGILSF DCVAIVQPRD PAAGYLMSAD CNFLNDWVVN 600 AGVARVVLPV SSGDQTASMQ NTCTGWTDNN APLGSCEVPV QSITYQVQTE DPNNEVISNN 660 ETHEATSALG LLALNYGNSS DSEEDPVQED VIVDGNEANT TNCSPESKSR CESSSLSLQN 720 CQSDAAGVHG RSPRELDSRE ERAFQNADVY MENGQNRDNA KYNSHQNLDC SVDFGTNNIP 780 STESNLVGKI RDSIKVSQTC SPCTYDAEAT KFCKAIAPMK NENVPFAPLC DEDSSRMHVF 840 CLEHAVEVEQ QLRQIGGVHI LLLCHPDYPK IEAEAKSMAE ELGINDLWNN TTFRDATKDD 900 QERIQSALDS EEAMPKKGDW AVKLGINLFY SANLSRTPLY SKQMPYNSVI YNAFGRSSPA 960 SSPMRSDGFG RRPIKKKVVA GKWCGRVWMS SHVHPFLAKR NPEEEEEEVR GFLACRIPDE 1020 KLDRKYDGTN RNSNAIITKK YVRKRKMKVE NESTKKAKCI KREDAVSENS MDDDSLEHHR 1080 RSLRSKQAIH IEAGSTKKGK HIQMEDAISD DSMEDNSHRQ RKRTLKSKVA TFIETDDIVS 1140 DDSLGVDSHH RNKKIPRSGQ AKHTGREDAF SDDSLDSDSH QLRRRVTKSK QARHTGIQDV 1200 VSDDSLDSES NPPHRRIPRS KQAKFMEGED SASDDFTGTN LYKQQTRIYK SKLAKSIERE 1260 DEVSDEPVEA NAHREDKRIL RSKQRNSAMQ QKRKLETPRV RPATSRPVKQ GTRQLVKQET 1320 PKLKQQTTRL RNNQCEQNTL HVCAEEEVEG GPSTRLRKRA PKPQKTAGPK RKEQQPTSRK 1380 KVKNALAVKA QAGRSDAKLK DEEAEYMCDV EGCTMSFGVK HELVLHKRNI CPVKGCGKKF 1440 FSHKYLVQHR RVHMDDRPLR CPWKGCKMTF KWAWARTEHI RVHTGARPYV CAEPGCGQTF 1500 RFVSDFSRHK RKTGHSAKKG R

Sequence ? help Back to Top

Protein Sequence Length: 1521 aa Download sequence

MAASTLPPDP SPEVFSWLKT LPLAPEYHPT LAEFQDPISY IFKIEKEAST YGICKIVPPV  60
PPSPKKTVIA NLNKSLAARA GSSDRSGPKT PPTFTTRQQQ IGFCPRKPRP VQRPVWQSGE  120
HYTFQEFEAK AKGFEKGFLK KCAKKGGNGG GPSALEIETL YWKATVDKPF SVEYANDMPG  180
SAFAPVSAKK GREAGESVTL GETAWNMRAV SRSKGSLLRF MKEEIPGVTS PMVYVAMMFS  240
WFAWHVEDHD LHSLNYMHMG AGKTWYGVPR EAAVAFEEVV RVHGYGGEIN PLVTFSVLGE  300
KTTVMSPEVF IKAGVPCCRL VQNAGEFVVT FPRAYHTGFS HGFNCGEAAN IATPEWLRVA  360
KDAAIRRASI NYPPMVSHFQ LLYDLALALC SRIPVSISAE PRSSRLKDKK KGEGETVVKE  420
LFVQNVLQNN DLLHVLGKGS PIVLLPRSSS DISLCSKLRV GSQLRLNASS PLGSCNSREE  480
MKSSRSLISD DLMIDRKQDV DQVRDFYPVK GKLASLCEGS WVPSLRGNKS TSTLDSKTPN  540
MNIEGESNVD GDRLSDQRLF SCVTCGILSF DCVAIVQPRD PAAGYLMSAD CNFLNDWVVN  600
AGVARVVLPV SSGDQTASMQ NTCTGWTDNN APLGSCEVPV QSITYQVQTE DPNNEVISNN  660
ETHEATSALG LLALNYGNSS DSEEDPVQED VIVDGNEANT TNCSPESKSR CESSSLSLQN  720
CQSDAAGVHG RSPRELDSRE ERAFQNADVY MENGQNRDNA KYNSHQNLDC SVDFGTNNIP  780
STESNLVGKI RDSIKVSQTC SPCTYDAEAT KFCKAIAPMK NENVPFAPLC DEDSSRMHVF  840
CLEHAVEVEQ QLRQIGGVHI LLLCHPDYPK IEAEAKSMAE ELGINDLWNN TTFRDATKDD  900
QERIQSALDS EEAMPKKGDW AVKLGINLFY SANLSRTPLY SKQMPYNSVI YNAFGRSSPA  960
SSPMRSDGFG RRPIKKKVVA GKWCGRVWMS SHVHPFLAKR NPEEEEEEVR GFLACRIPDE  1020
KLDRKYDGTN RNSNAIITKK YVRKRKMKVE NESTKKAKCI KREDAVSENS MDDDSLEHHR  1080
RSLRSKQAIH IEAGSTKKGK HIQMEDAISD DSMEDNSHRQ RKRTLKSKVA TFIETDDIVS  1140
DDSLGVDSHH RNKKIPRSGQ AKHTGREDAF SDDSLDSDSH QLRRRVTKSK QARHTGIQDV  1200
VSDDSLDSES NPPHRRIPRS KQAKFMEGED SASDDFTGTN LYKQQTRIYK SKLAKSIERE  1260
DEVSDEPVEA NAHREDKRIL RSKQRNSAMQ QKRKLETPRV RPATSRPVKQ GTRQLVKQET  1320
PKLKQQTTRL RNNQCEQNTL HVCAEEEVEG GPSTRLRKRA PKPQKTAGPK RKEQQPTSRK  1380
KVKNALAVKA QAGRSDAKLK DEEAEYMCDV EGCTMSFGVK HELVLHKRNI CPVKGCGKKF  1440
FSHKYLVQHR RVHMDDRPLR CPWKGCKMTF KWAWARTEHI RVHTGARPYV CAEPGCGQTF  1500
RFVSDFSRHK RKTGHSAKKG R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1040	1046	KYVRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	0.0	C2H2 family protein