PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON85027.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

MYB

Protein Properties

Length: 853aa MW: 95791.7 Da PI: 10.0098

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON85027.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	549	596	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl PON85027.1 549 KGAWTKEEDQRLIDYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 596 79****************************99**********97 PP
2	Myb_DNA-binding	57.9	2.4e-18	602	646	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ PON85027.1 602 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 646 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence
MHGYSRLGTA RATGSPPSSP RFRHGRNKSV GGGRGSKQSI VEKVVFILIS AVFRRRGVLL 60 LAPLLYISGM LLYMGSVSFD VVSLKNGVVV VHKRPPPGSV YRSSQVFEKL WPFMEAESNG 120 TDNALMSVWN SKVHQVWKSC VYKDISKSEL PKSNGFFIIE ANGGLNQQRL SICDAVAVAG 180 LLNATLVIPI FHLNSVWRDS SKFRDIFDED FFIHTLRNHV NVVRELPEDV LQRFDNNISN 240 IVNLRVKAWS SPTYYLHKVL PKLVEMGAVR IAPFSNRLAH AVPSSVQGLR CLANFEALRF 300 SESIKRLAEK MVDRMFKKSY QSGGKYVSVH LRFEEDMVAF SCCEYDGGEE EKHEMDIARE 360 RSWRGKFRRR GRVIRPGANR VDGKCPLTPL EVGMMLRAMG FDNTSLVYVA AGKIYKAEKY 420 MAPLKQMFPR LETKDTLATP EELAPFKGHS SRLAALDYTV CLHSEVFVTT QGGNFPHFLM 480 GHRRYLFDGH AKTIKPDKRK LALLFDNPNI RWEDFKRQMR DMLRHSDQKV NSNPQMGRSP 540 CCEKAHTNKG AWTKEEDQRL IDYIRTHGEG CWRSLPKAAG LLRCGKSCRL RWINYLRPDL 600 KRGNFTEEED ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIKRK LISRGVDPQT 660 HRPINESAGA GTGLATAGMD FRNGSPPPLP VAQINLMADG RRRRSTAAPA PAASRLVKAE 720 PKTEAAEEAN NYCTSSGTTT EEDQRQEKQE VVLGQSSPVL DLELSIGLGP FQSCDTAQSK 780 LVRIVPNNNN HQLSFGGAVQ YSPEMVYSQG AAAAVCLCCH LGSQGSSSST STEFCRNCQS 840 TNGFFRFHRR LNS

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence

MHGYSRLGTA RATGSPPSSP RFRHGRNKSV GGGRGSKQSI VEKVVFILIS AVFRRRGVLL  60
LAPLLYISGM LLYMGSVSFD VVSLKNGVVV VHKRPPPGSV YRSSQVFEKL WPFMEAESNG  120
TDNALMSVWN SKVHQVWKSC VYKDISKSEL PKSNGFFIIE ANGGLNQQRL SICDAVAVAG  180
LLNATLVIPI FHLNSVWRDS SKFRDIFDED FFIHTLRNHV NVVRELPEDV LQRFDNNISN  240
IVNLRVKAWS SPTYYLHKVL PKLVEMGAVR IAPFSNRLAH AVPSSVQGLR CLANFEALRF  300
SESIKRLAEK MVDRMFKKSY QSGGKYVSVH LRFEEDMVAF SCCEYDGGEE EKHEMDIARE  360
RSWRGKFRRR GRVIRPGANR VDGKCPLTPL EVGMMLRAMG FDNTSLVYVA AGKIYKAEKY  420
MAPLKQMFPR LETKDTLATP EELAPFKGHS SRLAALDYTV CLHSEVFVTT QGGNFPHFLM  480
GHRRYLFDGH AKTIKPDKRK LALLFDNPNI RWEDFKRQMR DMLRHSDQKV NSNPQMGRSP  540
CCEKAHTNKG AWTKEEDQRL IDYIRTHGEG CWRSLPKAAG LLRCGKSCRL RWINYLRPDL  600
KRGNFTEEED ELIIKLHSLL GNKWSLIAGR LPGRTDNEIK NYWNTHIKRK LISRGVDPQT  660
HRPINESAGA GTGLATAGMD FRNGSPPPLP VAQINLMADG RRRRSTAAPA PAASRLVKAE  720
PKTEAAEEAN NYCTSSGTTT EEDQRQEKQE VVLGQSSPVL DLELSIGLGP FQSCDTAQSK  780
LVRIVPNNNN HQLSFGGAVQ YSPEMVYSQG AAAAVCLCCH LGSQGSSSST STEFCRNCQS  840
TNGFFRFHRR LNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-88	MYB family protein