PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON84617.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

ARF

Protein Properties

Length: 1130aa MW: 126272 Da PI: 6.4374

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON84617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.3	1.2e-22	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++++++ +l +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ +l PON84617.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldytMQPPAQ--ELAARDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEKSQL 220 99***************************96555544..8**********************************************..4567778 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PON84617.1 221 LLGIRRA 227 9999997 PP
2	Auxin_resp	122.8	2.5e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gtv+g+sdld++rW+nS+Wr+L+ PON84617.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDSLRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1130 aa Download sequence
MKAPPNGFLA NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDFIPNYPNL PSKLMCMLHN VTLHADPETD EVYAQMTLQP VNKHDREALL ASDMGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYTMQ PPAQELAARD LHDNTWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRATRQ QPALSSSVIS 240 SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTVTGISDL DSLRWKNSQW RNLQVGWDES TAGERPSRVS LWEIEPVVTP 360 FYICPPPFFR PKFLKQPGMP DDESEMENAF KRAMPWLGDD FGMKDAASTI FPGLSLVQWM 420 NMQQNNQFSA AQSGFFPSMV SSAGMNNPSI DDPSKLLSFQ APVMSGTSVP LNKATPSNQV 480 QQPPVTWPQQ QQQLHQLLQN PVNQQQQNYS QQQQQLQQLL QTPPNQQLQN HPQQQQLPQQ 540 RLQHQHQEPP QHQQLQQQQQ QQQQQTQQQP QQQQICQPLL NNGVVANNQI PNQNLQQPVM 600 FSQHQQQQLV TGNTQSQQNG YSSKNSNQLT SLPMDSQFQQ QMEMQPSLFQ KQQQPAPLQQ 660 NPLQFLQQNL SQRTQQQPQL QQLSQQGLSE QQLHLQLLQK LQQQQQQQQL LSPTSSLLQP 720 QLLPQQGNQQ NQQLQSSPLS QHQQPLNSNS FSTEKLLNIN NFSTSTLTQS QPIPTSQPQS 780 QQKPLVAIRA NSGLTDGDAP SCSTSPSTNN CQISPPNLLN RNQQGPAMLV GDPVVEPASN 840 LVQELQSKSD IRIKHELPSS KGLDQLKYKG AITDQLEASS SGTSYLDAST IQQSFPLPTF 900 CLDGDVQSNQ RNNLAFGVNI DGLTPDTLLS RGYDSQKDLQ NLLSNCGGAP RDIETELSTA 960 GISSQSFGVP NMPFKPGCSS DVAINDAGVL NNGLWANQTQ RMRTYTKVQK RGSVGRCIDV 1020 TRYKGYDELR HDLARMFGIE GQLEDPQRTD WKLVYVDHEN DILLVGDDPW QEFVSCVQSI 1080 KILSSAEVQQ MSLDGDLGQV PVPNQACSGT DSGNAWRGQY DDTSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1130 aa Download sequence

MKAPPNGFLA NSGEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFIPNYPNL PSKLMCMLHN VTLHADPETD EVYAQMTLQP VNKHDREALL ASDMGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYTMQ PPAQELAARD LHDNTWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRATRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTVTGISDL DSLRWKNSQW RNLQVGWDES TAGERPSRVS LWEIEPVVTP  360
FYICPPPFFR PKFLKQPGMP DDESEMENAF KRAMPWLGDD FGMKDAASTI FPGLSLVQWM  420
NMQQNNQFSA AQSGFFPSMV SSAGMNNPSI DDPSKLLSFQ APVMSGTSVP LNKATPSNQV  480
QQPPVTWPQQ QQQLHQLLQN PVNQQQQNYS QQQQQLQQLL QTPPNQQLQN HPQQQQLPQQ  540
RLQHQHQEPP QHQQLQQQQQ QQQQQTQQQP QQQQICQPLL NNGVVANNQI PNQNLQQPVM  600
FSQHQQQQLV TGNTQSQQNG YSSKNSNQLT SLPMDSQFQQ QMEMQPSLFQ KQQQPAPLQQ  660
NPLQFLQQNL SQRTQQQPQL QQLSQQGLSE QQLHLQLLQK LQQQQQQQQL LSPTSSLLQP  720
QLLPQQGNQQ NQQLQSSPLS QHQQPLNSNS FSTEKLLNIN NFSTSTLTQS QPIPTSQPQS  780
QQKPLVAIRA NSGLTDGDAP SCSTSPSTNN CQISPPNLLN RNQQGPAMLV GDPVVEPASN  840
LVQELQSKSD IRIKHELPSS KGLDQLKYKG AITDQLEASS SGTSYLDAST IQQSFPLPTF  900
CLDGDVQSNQ RNNLAFGVNI DGLTPDTLLS RGYDSQKDLQ NLLSNCGGAP RDIETELSTA  960
GISSQSFGVP NMPFKPGCSS DVAINDAGVL NNGLWANQTQ RMRTYTKVQK RGSVGRCIDV  1020
TRYKGYDELR HDLARMFGIE GQLEDPQRTD WKLVYVDHEN DILLVGDDPW QEFVSCVQSI  1080
KILSSAEVQQ MSLDGDLGQV PVPNQACSGT DSGNAWRGQY DDTSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein