PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83915.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 375aa MW: 42981.9 Da PI: 6.6733

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	79	101	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H PON83915.1 79 CSyeGCGKTFIDAGALRKHSHIH 101 77779**************7766 PP
2	zf-C2H2	16.5	2.5e-05	106	130	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F ++s LkrH H PON83915.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130 9********************8877 PP
3	zf-C2H2	21.7	5.4e-07	136	160	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp Cgk Fs nL++H++tH PON83915.1 136 FVCPheGCGKAFSLDFNLRSHMKTH 160 89**********************9 PP
4	zf-C2H2	15.8	4e-05	166	190	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H PON83915.1 166 HICPypECGKRYAHEYKLKNHISSH 190 679999******************6 PP
5	zf-C2H2	13.8	0.00017	231	256	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H PON83915.1 231 YACPyeGCEKAYIHEYKLKLHLRReH 256 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
METHFNHNLF ERRPILRSKT PAVKWFREWV PQDVVATGGK CLILKWVTED TLKALKEKAK 60 EPEVPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS 120 SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE 180 YKLKNHISSH HEKSGTVDVT KYTPTPPPEK PIKTPKPAAG VYGSASSDRP YACPYEGCEK 240 AYIHEYKLKL HLRREHPGHT SDENAENPTT NADNEMDEGS DQDAYVGKRV NNGKSQKQNK 300 PKPSLKLPPA KIAQRKGSTP PPARVNVVKK PWPVKEEVYE EDSEETEEED RDNVENGWRY 360 AANNEEDDEE TEYED

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

METHFNHNLF ERRPILRSKT PAVKWFREWV PQDVVATGGK CLILKWVTED TLKALKEKAK  60
EPEVPEPEPE PTTEVLFLCS YEGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDFVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHISSH HEKSGTVDVT KYTPTPPPEK PIKTPKPAAG VYGSASSDRP YACPYEGCEK  240
AYIHEYKLKL HLRREHPGHT SDENAENPTT NADNEMDEGS DQDAYVGKRV NNGKSQKQNK  300
PKPSLKLPPA KIAQRKGSTP PPARVNVVKK PWPVKEEVYE EDSEETEEED RDNVENGWRY  360
AANNEEDDEE TEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-131	C2H2 family protein