PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83902.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 448aa MW: 50041.1 Da PI: 6.2557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83902.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00098	331	353	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C+ F ++ ++ H+ +H PON83902.1 331 YTCPKCKGAFMTSQLFAAHMGSH 353 9*******************887 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MALPFDPNSY SNQTPNPINT QFHQFNSNNL GLNDRTMNQQ NHAMFSSHQT VPCTGQLGLT 60 QRLVNEVRTT TTLVPQRVQL VQTVNIDFFP VQNQTPLPGS SFGDDHEFCV TEVVRTQEVV 120 RTQLLNSAST RDRFLAPNHD RYGAWSSTSI QGQANLQNQV MNHPIYTSSS TETQSSHNPV 180 HNFGHGTTYH GSKSSISTHF ENPMFEQQYS SYQYVPNPGF NQNPPTRNQT ATLRLIENDG 240 PTVDDVEPLN AILPGGGTKK PIPTQNQVLP SDNDNNHELQ SLPFNVEQIY NTGHHDGNTI 300 LEEGDDHNKD GDEIEGDGRT HSLPYKKYGP YTCPKCKGAF MTSQLFAAHM GSHYKYESAE 360 QRRRRHLAKY GRKKHLRLVN SKGGLTVVPD QRQPLKEAAP APTPARAESE IISTEVVDEN 420 KESGLEIVPV GSQLEGLYDV PIKEESLE

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MALPFDPNSY SNQTPNPINT QFHQFNSNNL GLNDRTMNQQ NHAMFSSHQT VPCTGQLGLT  60
QRLVNEVRTT TTLVPQRVQL VQTVNIDFFP VQNQTPLPGS SFGDDHEFCV TEVVRTQEVV  120
RTQLLNSAST RDRFLAPNHD RYGAWSSTSI QGQANLQNQV MNHPIYTSSS TETQSSHNPV  180
HNFGHGTTYH GSKSSISTHF ENPMFEQQYS SYQYVPNPGF NQNPPTRNQT ATLRLIENDG  240
PTVDDVEPLN AILPGGGTKK PIPTQNQVLP SDNDNNHELQ SLPFNVEQIY NTGHHDGNTI  300
LEEGDDHNKD GDEIEGDGRT HSLPYKKYGP YTCPKCKGAF MTSQLFAAHM GSHYKYESAE  360
QRRRRHLAKY GRKKHLRLVN SKGGLTVVPD QRQPLKEAAP APTPARAESE IISTEVVDEN  420
KESGLEIVPV GSQLEGLYDV PIKEESLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	374	RRRRHLAKYGRKK
2	371	378	GRKKHLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G15740.1	4e-23	C2H2 family protein