PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G15740.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 329aa    MW: 38003.1 Da    PI: 8.5783
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G15740.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.8e-06244266123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+Cp+C+ +F+++  +  H+++H
  AT2G15740.1 244 YTCPKCNGVFNTSQKFAAHMSSH 266
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556244271IPR007087Zinc finger, C2H2
SMARTSM003550.0044244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009025anatomyvascular leaf
PO:0007064developmental stageLP.12 twelve leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSSMPNKFNP HCDDNNRGFS SIQMNQNSQM VHSRFITSDH TNHGDLFSSS PSFSCFHNSH  60
ASSSSFGFQN SHVENHMMKR NIISDDNYFS ITNNPHFTRV SFTQTITNKF TAIVPTNTLD  120
AVQYDAQRVK RAMNPKTNIW NPIFSPPNTF DKQCEFLNPK PLNVIFPSQN SAYPQHLDMF  180
SLSSKHNHDQ RVLQDGRSMK KILKPTIFFE ATTDYIESQE NEKSNNDHND GRTHSLPYEK  240
YGPYTCPKCN GVFNTSQKFA AHMSSHYKNE TSEEREQRIR AKNKRKFCKL NREINGEPQK  300
TKQEDVANNS EKSDDKTFQH LVVVKEELV
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO183979160.0
Genevisible265498_at0.0
Expression AtlasAT2G15740-
AtGenExpressAT2G15740-
ATTED-IIAT2G15740-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00264DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G15740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G15740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062480.0AC006248.4 Arabidopsis thaliana chromosome 2 clone F9O13 map mi398, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_179176.10.0C2H2-like zinc finger protein
TrEMBLQ9ZQE00.0Q9ZQE0_ARATH; C2H2-like zinc finger protein
STRINGAT2G15740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19241958
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Dal Bosco C, et al.
    Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.
    J. Biol. Chem., 2004. 279(2): p. 1060-9
    [PMID:14576160]
  3. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  4. Day RC,Herridge RP,Ambrose BA,Macknight RC
    Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation.
    Plant Physiol., 2008. 148(4): p. 1964-84
    [PMID:18923020]