PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON83460.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 545aa MW: 60999.2 Da PI: 7.363

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON83460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	84	104	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F + L H+r H PON83460.1 84 CRVCGKEFDSLRALFGHMRHH 104 9******************99 PP
2	zf-C2H2	16.9	1.8e-05	114	134	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + +L+ H++tH PON83460.1 114 CKECGKEFESLRTLTGHMKTH 134 ********************9 PP
3	zf-C2H2	12	0.00063	380	402	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k F+++ L H+ +H PON83460.1 380 YKCRTCNKIFNSHQALGGHQTVH 402 9***************9999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MEQDQEQRHV CRFCNKSFLN GKVLGGHMRC HVAKNSTKTE RNLNQSNPDI EGGERVGYGL 60 RVNPKKSCKV SGSTQEASGQ EILCRVCGKE FDSLRALFGH MRHHSGKRRK MVLCKECGKE 120 FESLRTLTGH MKTHSERFRV SIESSDVPSE KLFGDNQYSG GGTSGLVRKK RSRRLRYSNK 180 ITPNSSFSTL SESSCGVECD HEVEEVAICL LMLSRGVRNW DGFSSVAESS DNNSSEVKSP 240 NRSKRILDND GDGCLRMKKS RLEKSELCVL DSNNSFFGDK KVSEFSENDF GSENDEEKSA 300 KLDDRSAIAL ADTETEKVSD EKMKINSIET ESDDYQRVEV GEDLSAGFGS LKVSLSGKTR 360 LDYSNSGSQI LYTYHKKSGY KCRTCNKIFN SHQALGGHQT VHRTPKKCST FLNDDRQIVD 420 HSEDFPGTEA NVKSSKTEYD EISVEQEMDR GTMTSNEIKE HKCPICFKIF ASGQALGGHK 480 RAHLVKDSEI APEQIILLKH SVCNGCDVLD VPMTLGNEAN TEVDLKSWWV KNDHKHELLV 540 GLIPN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MEQDQEQRHV CRFCNKSFLN GKVLGGHMRC HVAKNSTKTE RNLNQSNPDI EGGERVGYGL  60
RVNPKKSCKV SGSTQEASGQ EILCRVCGKE FDSLRALFGH MRHHSGKRRK MVLCKECGKE  120
FESLRTLTGH MKTHSERFRV SIESSDVPSE KLFGDNQYSG GGTSGLVRKK RSRRLRYSNK  180
ITPNSSFSTL SESSCGVECD HEVEEVAICL LMLSRGVRNW DGFSSVAESS DNNSSEVKSP  240
NRSKRILDND GDGCLRMKKS RLEKSELCVL DSNNSFFGDK KVSEFSENDF GSENDEEKSA  300
KLDDRSAIAL ADTETEKVSD EKMKINSIET ESDDYQRVEV GEDLSAGFGS LKVSLSGKTR  360
LDYSNSGSQI LYTYHKKSGY KCRTCNKIFN SHQALGGHQT VHRTPKKCST FLNDDRQIVD  420
HSEDFPGTEA NVKSSKTEYD EISVEQEMDR GTMTSNEIKE HKCPICFKIF ASGQALGGHK  480
RAHLVKDSEI APEQIILLKH SVCNGCDVLD VPMTLGNEAN TEVDLKSWWV KNDHKHELLV  540
GLIPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-18	C2H2 family protein