PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON81306.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 720aa MW: 78410 Da PI: 6.6941

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON81306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.7e-08	298	318	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg PON81306.1 298 PCPDFRK-GACRRGDLCEYAHG 318 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence
MCGGPEHSKT SSSSTVETAS NTKDMSNLSI KAEDSFGCLL ELASNNDVEG FKRSIEQDSS 60 SINDVGLWYS RCKVAKHIVP DYRTPLMVAA TYGSVDVLKL VLSCTEVDIN LSCGLHKSTA 120 LHCAASGGSA NALDVVKLLL SAGADPNSMD SNGHRPVDVI VVHPKLQGMR VMFEELLTKD 180 AYDCSIGEHP MNLSINCSNS DSSTLSSSLD NEVQSPVISK ITDLPPISTL EKKEYPIDPS 240 IPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP 300 DFRKGACRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHR TEELRPLYVS 360 TGSGVPSPRA SASAPNGPNV MDMAAALSLL PGSPSSVSAM SPSPFGQPMS PSANGMSHSS 420 MAWPQPNVPT LHLPGSNLQS SRLRSSLSAR DIPPEDLNML LEFDAQQQLL NDMNCFSQPR 480 LSSASLSRPC RSKTLTPSNL DELFSAEISS SPRYSDHMTA STFSPTHKSA VFNQFQQQQS 540 MLSPINTTVL SPKTVDHPLL QASFGVQSPG RMSPRSVEPI SPMSARLSAF SQREKQHQQL 600 RSLSSRDLGS NNTTSIVGCP ASSWSKWGSP NGKLDWSVNG EDHSRIRRSS SFEFGNNGEE 660 PDLSWVQSLV KESPPEMMKD KAAPSVTGAA ASGEGLNSNS QIDSIDHSVL GAWVEQMQLA

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence

MCGGPEHSKT SSSSTVETAS NTKDMSNLSI KAEDSFGCLL ELASNNDVEG FKRSIEQDSS  60
SINDVGLWYS RCKVAKHIVP DYRTPLMVAA TYGSVDVLKL VLSCTEVDIN LSCGLHKSTA  120
LHCAASGGSA NALDVVKLLL SAGADPNSMD SNGHRPVDVI VVHPKLQGMR VMFEELLTKD  180
AYDCSIGEHP MNLSINCSNS DSSTLSSSLD NEVQSPVISK ITDLPPISTL EKKEYPIDPS  240
IPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  300
DFRKGACRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHR TEELRPLYVS  360
TGSGVPSPRA SASAPNGPNV MDMAAALSLL PGSPSSVSAM SPSPFGQPMS PSANGMSHSS  420
MAWPQPNVPT LHLPGSNLQS SRLRSSLSAR DIPPEDLNML LEFDAQQQLL NDMNCFSQPR  480
LSSASLSRPC RSKTLTPSNL DELFSAEISS SPRYSDHMTA STFSPTHKSA VFNQFQQQQS  540
MLSPINTTVL SPKTVDHPLL QASFGVQSPG RMSPRSVEPI SPMSARLSAF SQREKQHQQL  600
RSLSSRDLGS NNTTSIVGCP ASSWSKWGSP NGKLDWSVNG EDHSRIRRSS SFEFGNNGEE  660
PDLSWVQSLV KESPPEMMKD KAAPSVTGAA ASGEGLNSNS QIDSIDHSVL GAWVEQMQLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein