PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON81306.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family C3H
Protein Properties Length: 720aa    MW: 78410 Da    PI: 6.6941
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON81306.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08298318526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  PON81306.1 298 PCPDFRK-GACRRGDLCEYAHG 318
                 8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MCGGPEHSKT SSSSTVETAS NTKDMSNLSI KAEDSFGCLL ELASNNDVEG FKRSIEQDSS  60
SINDVGLWYS RCKVAKHIVP DYRTPLMVAA TYGSVDVLKL VLSCTEVDIN LSCGLHKSTA  120
LHCAASGGSA NALDVVKLLL SAGADPNSMD SNGHRPVDVI VVHPKLQGMR VMFEELLTKD  180
AYDCSIGEHP MNLSINCSNS DSSTLSSSLD NEVQSPVISK ITDLPPISTL EKKEYPIDPS  240
IPDIKNSIYA TDEFRMFSFK VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP  300
DFRKGACRRG DLCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHR TEELRPLYVS  360
TGSGVPSPRA SASAPNGPNV MDMAAALSLL PGSPSSVSAM SPSPFGQPMS PSANGMSHSS  420
MAWPQPNVPT LHLPGSNLQS SRLRSSLSAR DIPPEDLNML LEFDAQQQLL NDMNCFSQPR  480
LSSASLSRPC RSKTLTPSNL DELFSAEISS SPRYSDHMTA STFSPTHKSA VFNQFQQQQS  540
MLSPINTTVL SPKTVDHPLL QASFGVQSPG RMSPRSVEPI SPMSARLSAF SQREKQHQQL  600
RSLSSRDLGS NNTTSIVGCP ASSWSKWGSP NGKLDWSVNG EDHSRIRRSS SFEFGNNGEE  660
PDLSWVQSLV KESPPEMMKD KAAPSVTGAA ASGEGLNSNS QIDSIDHSVL GAWVEQMQLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein