PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON80404.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 563aa MW: 61435.4 Da PI: 9.1597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON80404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H PON80404.1 60 FICEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	12.9	0.00034	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ PON80404.1 137 WKCEKCSKKYAVQSDWKAHTKVC 159 58*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MVLAPPSEGL LKNQIQTLTL TLIRIHQLIR RREIYLETQA NPDAEVIALS PKSLMATNRF 60 ICEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTNKDVVRKK VYVCPEKSCV HHDPSRALGD 120 LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKVCG TREYKCDCGT LFSRKDSFIT 180 HRAFCDALAE ENARFGTTAV PNTNILPSFI NNNINNPQTA ASRMTHPHLS PIFQPEFGSE 240 SVANFGSNAT GDIRPRLPLW LDPSNSHQLN SNNIPFLSAT GGNSPSVGGG FPELLQTAAA 300 TATLFGGQPS SAPPQISHHQ WLNKFSSAHD HQGATTFPTM SSSLLPPPGL KEEEETKGNN 360 IKNSISLSES MMTTTSSLHP NNQSPQLQGP APHMSATALL QKAAQMGSTR SNNASSFSGS 420 AFGLISSLSS SSSNSHKQVL FRQPVNHQST AAENNFNDLV NSLQAASSDN ANNNNNNNNN 480 GPAAVLSSPS SFNLKQAAAA QSLSANNNEN HDIDEHSLTR DFLGVGGDGH HIHGNGSNFF 540 QQELEKFASM GSAMNLSQFS GHH

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MVLAPPSEGL LKNQIQTLTL TLIRIHQLIR RREIYLETQA NPDAEVIALS PKSLMATNRF  60
ICEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTNKDVVRKK VYVCPEKSCV HHDPSRALGD  120
LTGIKKHFSR KHGEKKWKCE KCSKKYAVQS DWKAHTKVCG TREYKCDCGT LFSRKDSFIT  180
HRAFCDALAE ENARFGTTAV PNTNILPSFI NNNINNPQTA ASRMTHPHLS PIFQPEFGSE  240
SVANFGSNAT GDIRPRLPLW LDPSNSHQLN SNNIPFLSAT GGNSPSVGGG FPELLQTAAA  300
TATLFGGQPS SAPPQISHHQ WLNKFSSAHD HQGATTFPTM SSSLLPPPGL KEEEETKGNN  360
IKNSISLSES MMTTTSSLHP NNQSPQLQGP APHMSATALL QKAAQMGSTR SNNASSFSGS  420
AFGLISSLSS SSSNSHKQVL FRQPVNHQST AAENNFNDLV NSLQAASSDN ANNNNNNNNN  480
GPAAVLSSPS SFNLKQAAAA QSLSANNNEN HDIDEHSLTR DFLGVGGDGH HIHGNGSNFF  540
QQELEKFASM GSAMNLSQFS GHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	100	KLRQRTNKDVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	5e-94	C2H2 family protein