PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G60470.1
Common NameIDD13
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 450aa    MW: 50484 Da    PI: 9.6982
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G60470.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-056486123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  AT5G60470.1 64 FFCEICNKGFQREQNLQLHKRGH 86
                 67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-56386No hitNo description
PROSITE profilePS5015710.8036486IPR007087Zinc finger, C2H2
SMARTSM003550.0096486IPR015880Zinc finger, C2H2-like
PfamPF121715.0E-66486IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355120106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-5136161No hitNo description
SMARTSM00355260141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009047anatomystem
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTASHSLALS MTKSTSPLIL TLTLSLQPPL KHPRKRETFQ EIQAYPNAEV ISLSPKSLMA  60
TNRFFCEICN KGFQREQNLQ LHKRGHNLPW KLKQKTNKNQ VKKKVYICPE KSCVHHDPAR  120
ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVISDWKAHN KICGSREFRC DCGTLFSRKD  180
SFISHRSFCD VLAEESSKFF SVPSPLAANS TIATVTDTNN PILIQSQLDQ SSTGTADLNV  240
NNNHTTLFGQ KFTNSNPTQQ QPNALALSSP PSPRSTSDSV HNLWKLQEEE CAHQWLLNEY  300
MNNNKNIFHK GIFKNQEDEI KKGNIYSGSN PTDGNIASLF SYNQEAVNMA SFSATTLLQK  360
VAQTGTPSSS ETSTTMFGQM TSSIFNNTML NSYCLTAKNN EEELTRDFLG VGSSEDQQRL  420
HRHRFPSSVP LTANHDIPKL AATIVGRKQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-31137202368Zinc finger protein JACKDAW
5b3h_F9e-31137202368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2402564640.0
Genevisible247633_at0.0
Expression AtlasAT5G60470-
AtGenExpressAT5G60470-
ATTED-IIAT5G60470-
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G60470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G60470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200855.40.0C2H2 and C2HC zinc fingers superfamily protein
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLA0A178UIB80.0A0A178UIB8_ARATH; Uncharacterized protein
STRINGAT5G60470.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Representative plantOGRP9516242
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Englbrecht CC,Schoof H,B
    Conservation, diversification and expansion of C2H2 zinc finger proteins in the Arabidopsis thaliana genome.
    BMC Genomics, 2004. 5(1): p. 39
    [PMID:15236668]
  3. Colasanti J, et al.
    The maize INDETERMINATE1 flowering time regulator defines a highly conserved zinc finger protein family in higher plants.
    BMC Genomics, 2006. 7: p. 158
    [PMID:16784536]
  4. Morita MT, et al.
    A C2H2-type zinc finger protein, SGR5, is involved in early events of gravitropism in Arabidopsis inflorescence stems.
    Plant J., 2006. 47(4): p. 619-28
    [PMID:16813575]
  5. Taji T, et al.
    Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila.
    BMC Plant Biol., 2008. 8: p. 115
    [PMID:19014467]
  6. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]