PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON79559.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 589aa MW: 63655.4 Da PI: 7.1816

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON79559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.4	1.3e-11	205	261	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g PON79559.1 205 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 261 57*****************5444.2455536655.779999************98 PP
2	AP2	47	6.4e-15	304	355	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PON79559.1 304 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 355 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MDSSSSTTTT HPHPHHHQNW LAFSLSNHPS LFQTAAFTSP NNPAITTTTT TPAEDHHDAS 60 STDLAMFTGA GGGAPKLEDF LGGGGGRATA SNVEPPLLCH HNTDNTNDQF ATDQTIVASL 120 SSTAAEIYES DLKTIAASFL RGFNSNISNN NNSNINNGGT ILNIDQHIDV NPSCHVATPP 180 SLVAPVDPTA AAAKKTVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG 240 GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYEKELEEM KNMNRQEFVA SLRRKSSGFS 300 RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT 360 NFDMNRYDVK SIANSNLPIG GMSNTKSKTS SDQLADDHRD LISSVASSVV TFAAPAPQPA 420 STLSFAIPIK QDPSSASSTS SSSSTDHSYW SNIFGFQNPT STTTTTTTTT NTTVPIPSLF 480 HNKPNISSVL NPYNMDHYSA TTTSTSVASH ESHGLNNVVG FFGTGTATSV PYHNSYETSN 540 ATSGYGISSW NNGNSDSNVG PTLHTFHQHH HQAHAKPASL FQTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MDSSSSTTTT HPHPHHHQNW LAFSLSNHPS LFQTAAFTSP NNPAITTTTT TPAEDHHDAS  60
STDLAMFTGA GGGAPKLEDF LGGGGGRATA SNVEPPLLCH HNTDNTNDQF ATDQTIVASL  120
SSTAAEIYES DLKTIAASFL RGFNSNISNN NNSNINNGGT ILNIDQHIDV NPSCHVATPP  180
SLVAPVDPTA AAAKKTVDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG  240
GYDKEEKAAR AYDLAALKYW GPTTTTNFPV SNYEKELEEM KNMNRQEFVA SLRRKSSGFS  300
RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGLNAVT  360
NFDMNRYDVK SIANSNLPIG GMSNTKSKTS SDQLADDHRD LISSVASSVV TFAAPAPQPA  420
STLSFAIPIK QDPSSASSTS SSSSTDHSYW SNIFGFQNPT STTTTTTTTT NTTVPIPSLF  480
HNKPNISSVL NPYNMDHYSA TTTSTSVASH ESHGLNNVVG FFGTGTATSV PYHNSYETSN  540
ATSGYGISSW NNGNSDSNVG PTLHTFHQHH HQAHAKPASL FQTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-130	AP2 family protein