PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON78476.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C2H2

Protein Properties

Length: 327aa MW: 35427.3 Da PI: 7.8958

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON78476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H PON78476.1 173 FECSSCKKVFRSHQALGGHRASH 195 89**************9999888 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MNNNTAFDFD LRFPVLPPGS SASSHQNPRK KRSKPTRPEQ SALGGVAPLA KYGKRPDPGA 60 PKITRPCTEC GKKFWSWKAL FGHMRCHPER QWRGINPPPN TRPVSPPLTN SETAQMMAGN 120 YESDREIAAC LLLLANGIPS GTATGTADHS TSTSYDVVVE NSGGGGGGDG CVFECSSCKK 180 VFRSHQALGG HRASHKNVKG CFAITKSSTT TTTTTTESTE AEEDQTTVLG EKRQQGQGQD 240 HDQHYYYYKC GICFKGFTSG QALGGHMRCH WDRDDDQAGL KEQGFSPSNG LDLNLPAPAM 300 ELDDDYSSSN SFTSSSRLSN LDLRLGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35280.1	2e-66	C2H2 family protein