PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PON66412.1
Organism
Trema orientale
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
Family MYB
Protein Properties Length: 299aa    MW: 33860.1 Da    PI: 7.5311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PON66412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv ++k +G gtW + +++ g+ R++k+c++rw +yl
       PON66412.1 14 KGAWTPEEDQILVSYIKNHGHGTWGSLPKHAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding52.51.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+  +v+++ ++G++ W+ Ia+ ++ gRt++++k++w+++l
       PON66412.1  67 RGPFSEEEENTIVQLHGMFGNR-WAVIASQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MGRRPCCEKN GVRKGAWTPE EDQILVSYIK NHGHGTWGSL PKHAGLLRCG KSCRLRWTNY  60
LRPGIKRGPF SEEEENTIVQ LHGMFGNRWA VIASQLPGRT DNEIKNYWNT HLKKRFLSDK  120
HQENLPLSLC DPPGYMESQS SPVTRHMMQW ENARVEAELR LSTESSLLNS LPNPNADHFL  180
LLWNSEIGKS FRQIKPKDGS PVSQRYSYAK FESSSSVPMQ ASDKKKTRST SIMVQEQEDG  240
CKPMANSDSS SLYELSDLSN TVSDLLLDFP AGYDLDFLNG SEDGFAISLD RKPDNTLLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.17e-92MYB family protein