PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PON63909.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 228aa MW: 25924.5 Da PI: 6.9282 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.5 | 1.3e-11 | 11 | 49 | 12 | 50 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R++++ KKA EL LC+ ev+++ + ++g++ ++ PON63909.1 11 IFQRRKATLKKKAGELGALCNSEVCLVCYEPNGEVDVWP 49 5999*******************************9997 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MMMNREKSSK IFQRRKATLK KKAGELGALC NSEVCLVCYE PNGEVDVWPE DPAKAQSIIH 60 RYYSRLESSS SNNAYKKRKE KLNLSDMLEK KMKKLEEQVG NQHHHYLDNN SSINTANTID 120 CVGFPRVLPS LWDEELDNLS GDSLMGLSQC LEAKIRKLDE KIELLKQTST QSGKEEHYID 180 LPPSLLPQQY VSVIMPQEYA SSSSHACSNM LHGDIAPLHQ LCNISYTF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18650.1 | 6e-16 | M-type_MADS family protein |