PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G18650.1 | ||||||||
Common Name | AGL103 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 386aa MW: 43551.6 Da PI: 9.1996 | ||||||||
Description | AGAMOUS-like 103 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.8 | 5.9e-23 | 29 | 73 | 6 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +s r ++++kR+++++KKA+ELS+LCd++v+vi ++s+g+l++++ AT3G18650.1 29 SSSRATSLIKRQQTVFKKAKELSILCDIDVCVICYGSNGELKTWP 73 5789****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.1E-7 | 14 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.63E-23 | 18 | 100 | No hit | No description |
PROSITE profile | PS50066 | 12.895 | 29 | 76 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.68E-19 | 29 | 108 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-15 | 30 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-6 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-6 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020090 | anatomy | embryo sac central cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MASSSSSSLS FSTSKKNKTF FKKPNSAFSS SRATSLIKRQ QTVFKKAKEL SILCDIDVCV 60 ICYGSNGELK TWPEEREKVK AIARRYGELS ETKRRKGSVD LHEFLEKMNK DDPEKEEKKK 120 IKVRRVPKVK YPVWDPRFDN YSVEQLMGLV QSLERNLTRI QHRTCAVVEA QGQRRVQYTN 180 MANQELMMAN TMNQLQQHSN QVSMYLWNHG NGAFSQIPVS ALASNQTQSL APIPPELMIY 240 PNSDAGNYSG SLGVQGTGIN GLQNMNMLTY NNINSVNDFS KQFDQNSRAE SYSSLLGVHE 300 DGNNEFENPN MSSRNNFNVQ DCAGLLGMQG AGTNGLQSMN MHDYSNNNSI NSNGLSHQYV 360 QFPTYNSQHQ DRVFNLDQNG NNTRSL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18401958 | 0.0 | ||||
Genevisible | 257549_at | 0.0 | ||||
Expression Atlas | AT3G18650 | - | ||||
AtGenExpress | AT3G18650 | - | ||||
ATTED-II | AT3G18650 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G18650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G04640, AT5G27130, AT1G31640, AT1G46408, AT1G47760, AT1G48150, AT1G60880, AT1G60920 | |||||
IntAct | Search Q9LSB2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G18650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026654 | 0.0 | AB026654.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVE11. | |||
GenBank | BT029549 | 0.0 | BT029549.1 Arabidopsis thaliana At3g18650 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_188495.1 | 0.0 | AGAMOUS-like 103 | ||||
Swissprot | Q9LSB2 | 0.0 | AG103_ARATH; Agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A178V6E8 | 0.0 | A0A178V6E8_ARATH; AGL103 | ||||
STRING | AT3G18650.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 | Representative plant | OGRP6766 | 2 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT3G18650.1 |
Entrez Gene | 821396 |
iHOP | AT3G18650 |
wikigenes | AT3G18650 |