PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON61381.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

C3H

Protein Properties

Length: 714aa MW: 79107.3 Da PI: 9.0348

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON61381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.7e-08	172	192	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+f+a+ G+C G++C+F H+ PON61381.1 172 ICDFYAK-GWCIKGSSCRFLHV 192 8****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MLLRYTSVLL FKSTRLDVRV DLISQRYDGS LGSSSSTRGK FGEDVAFSED KRSVEFAIDM 60 KGAETLAEKS SLKHSSKRTS DSNPDLRAND ILNVKSYNSS GTKGKEMVNA ELMNNCVGQK 120 HGLHSQDEIK QMDMQFCNDE KQKVLRLAAF EKETRSHSPG AEIKDNKRPA VICDFYAKGW 180 CIKGSSCRFL HVKDLKNDLP QREGDGAADY KAEVQLGGSR ETAQRSRSPS FHDGLAPSVG 240 NNSAFPLHLP SERIKPLEHV ESKGSLKFPE MPKFLSQREE VFPLSFKDIG RDSKSQNTPA 300 NDYSDHGSLI NRDGSVLRNS FHPEYAVSSS GHVISSANYR LMNPSSHSRS MEELASIQSQ 360 RRHNNQTSPL TSHSPNSGSS TSLLTNGVLS SDRISAWTES TLPFSYSSLN PSSLGSRSSS 420 LFQISSHFSS SEPDNLPSTK RKFSSDDWEP SVPFRPSFLV RSMMSSTGSQ YDPLRDSVEL 480 PKSGDMSLRA SLHSQGSSVV NTLHQQNHGD AVSETPDPAC NDDTKSVSSH NTFHGNMLDK 540 SCRKQGRDTQ TTEVEVVGTS TAWQNGTMPR QKNSLVSSDV KDITEATSDG RRQSQRHGPK 600 GSLDVKADRI RQNNDVVVGR IVEGVVHKES KALLHFRAAL IDFVKDLLKP KWREGLLSKD 660 AHKQIVKKAV EKVLSTLQPE QIPPSMELVK HYLASSRPKI DKLVEDYAEI YGKL

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MLLRYTSVLL FKSTRLDVRV DLISQRYDGS LGSSSSTRGK FGEDVAFSED KRSVEFAIDM  60
KGAETLAEKS SLKHSSKRTS DSNPDLRAND ILNVKSYNSS GTKGKEMVNA ELMNNCVGQK  120
HGLHSQDEIK QMDMQFCNDE KQKVLRLAAF EKETRSHSPG AEIKDNKRPA VICDFYAKGW  180
CIKGSSCRFL HVKDLKNDLP QREGDGAADY KAEVQLGGSR ETAQRSRSPS FHDGLAPSVG  240
NNSAFPLHLP SERIKPLEHV ESKGSLKFPE MPKFLSQREE VFPLSFKDIG RDSKSQNTPA  300
NDYSDHGSLI NRDGSVLRNS FHPEYAVSSS GHVISSANYR LMNPSSHSRS MEELASIQSQ  360
RRHNNQTSPL TSHSPNSGSS TSLLTNGVLS SDRISAWTES TLPFSYSSLN PSSLGSRSSS  420
LFQISSHFSS SEPDNLPSTK RKFSSDDWEP SVPFRPSFLV RSMMSSTGSQ YDPLRDSVEL  480
PKSGDMSLRA SLHSQGSSVV NTLHQQNHGD AVSETPDPAC NDDTKSVSSH NTFHGNMLDK  540
SCRKQGRDTQ TTEVEVVGTS TAWQNGTMPR QKNSLVSSDV KDITEATSDG RRQSQRHGPK  600
GSLDVKADRI RQNNDVVVGR IVEGVVHKES KALLHFRAAL IDFVKDLLKP KWREGLLSKD  660
AHKQIVKKAV EKVLSTLQPE QIPPSMELVK HYLASSRPKI DKLVEDYAEI YGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-33	C3H family protein