PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON54986.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

SBP

Protein Properties

Length: 476aa MW: 52085.9 Da PI: 8.6211

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON54986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.2	8.8e-42	183	260	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ dls+ak+yhr+h++Ce+hsk+p v+v g+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk+q+ PON54986.1 183 RCQVEGCNLDLSSAKDYHRKHRICETHSKTPRVIVGGVERRFCQQCSRFHGLSEFDEKKRSCRRRLSDHNARRRKPQP 260 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEWNSKPSLL WDLENLFEFD TKATENPKKL QLTDCGIEGD RGISSGSLHS PGDGGGSAGT 60 GGSGSDFGHA SSRSSISASI NSSSIGESKT SKFTLDGFEP FSKDLTSKND TTKVQQPGSS 120 PTAEISAGSG EPLLSLKLGK RMYFKDICSE SNAKTPSLSV VSMSSATTVK RSKSTCQGTL 180 VPRCQVEGCN LDLSSAKDYH RKHRICETHS KTPRVIVGGV ERRFCQQCSR FHGLSEFDEK 240 KRSCRRRLSD HNARRRKPQP EAVRINPARL SSLYDETPKM SLVFDQTPRL YTRHAANLTW 300 DNTDSSKFGH TREYLSRPAK PGGTAGQLLL PTSDQMPNNI TMLYQDPSRL TPNKVTAPEV 360 IQSGLEETVV SSDLNTTQDL HRALSLLSTS SWGSRETKPA SLDTLNNTSH SSMVQPAVHP 420 ISQGLPLASE YWQTQQPTID AASPISHQRS NGGSQFQDLH LFKAPTESGF YSYQFN

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEWNSKPSLL WDLENLFEFD TKATENPKKL QLTDCGIEGD RGISSGSLHS PGDGGGSAGT  60
GGSGSDFGHA SSRSSISASI NSSSIGESKT SKFTLDGFEP FSKDLTSKND TTKVQQPGSS  120
PTAEISAGSG EPLLSLKLGK RMYFKDICSE SNAKTPSLSV VSMSSATTVK RSKSTCQGTL  180
VPRCQVEGCN LDLSSAKDYH RKHRICETHS KTPRVIVGGV ERRFCQQCSR FHGLSEFDEK  240
KRSCRRRLSD HNARRRKPQP EAVRINPARL SSLYDETPKM SLVFDQTPRL YTRHAANLTW  300
DNTDSSKFGH TREYLSRPAK PGGTAGQLLL PTSDQMPNNI TMLYQDPSRL TPNKVTAPEV  360
IQSGLEETVV SSDLNTTQDL HRALSLLSTS SWGSRETKPA SLDTLNNTSH SSMVQPAVHP  420
ISQGLPLASE YWQTQQPTID AASPISHQRS NGGSQFQDLH LFKAPTESGF YSYQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	240	257	KKRSCRRRLSDHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	3e-79	SBP family protein