PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON53220.1

Organism

Trema orientale

Taxonomic ID

63057

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Trema

Family

AP2

Protein Properties

Length: 510aa MW: 55802.8 Da PI: 6.5905

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON53220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.5e-17	172	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PON53220.1 172 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 221 78*****************......55**********************997 PP
2	AP2	41.1	4.5e-13	264	314	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g PON53220.1 264 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKCNG 314 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MLDLNLNVHS ADSSAQNEDS SSMLLEKIPQ GSGTQMDESG TSNSSIVNAD ASSNGGDDES 60 CSARAGGNEV YTFNFDILKV GGTENDVAVV TKELFPMGGG NGDFKDWQVQ SSSSSSSSRK 120 NWIELGFDQS GAGEVRMIQQ QPQPQPQPQL QPQPQQQQPA KKSRRGPRSR SSQYRGVTFY 180 RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDLKQM 240 KNLTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE 300 AARAYDKAAI KCNGREAVTN FEPSTYEGDM NSEASNEGEN HNLDLNLGIS TPSFGNGQKE 360 SEGRIQFHPG PYEMHSRKLL GMENHTSATL SDPPFKGLVM TPEQPLVLNG VYPSFFPSEE 420 RATEKRIALG SSQGLPPWQM HGQVTATPVP LFSTAASSGF SFSAAPPSAA ILPSKPLNPA 480 TLNLCFTSSA AAATHSSQYY YQLKPPQAPP

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MLDLNLNVHS ADSSAQNEDS SSMLLEKIPQ GSGTQMDESG TSNSSIVNAD ASSNGGDDES  60
CSARAGGNEV YTFNFDILKV GGTENDVAVV TKELFPMGGG NGDFKDWQVQ SSSSSSSSRK  120
NWIELGFDQS GAGEVRMIQQ QPQPQPQPQL QPQPQQQQPA KKSRRGPRSR SSQYRGVTFY  180
RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNL SDYEDDLKQM  240
KNLTKEEFVH ILRRQSTGFS RGSSKYRGVT LHKCGRWEAR MGQFLGKKYI YLGLFDSEVE  300
AARAYDKAAI KCNGREAVTN FEPSTYEGDM NSEASNEGEN HNLDLNLGIS TPSFGNGQKE  360
SEGRIQFHPG PYEMHSRKLL GMENHTSATL SDPPFKGLVM TPEQPLVLNG VYPSFFPSEE  420
RATEKRIALG SSQGLPPWQM HGQVTATPVP LFSTAASSGF SFSAAPPSAA ILPSKPLNPA  480
TLNLCFTSSA AAATHSSQYY YQLKPPQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	1e-132	AP2 family protein